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neuroelf_feature_requests [2011/04/21 04:13]
jochen added requests from CU and SCAN meetings
neuroelf_feature_requests [2011/05/08 04:19] (current)
jochen moved two features to implemented section
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 ^ Feature name              ^ Requested by       ^ Request date  ^ Description ​ ^ Status ​ ^ ^ Feature name              ^ Requested by       ^ Request date  ^ Description ​ ^ Status ​ ^
 | HDR menu -> segmentation ​ | Jochen Weber       | 4/​12/​2011 ​    | adding segmentation (SPM-based) to the HDR menu  | in pipeline ​ | | HDR menu -> segmentation ​ | Jochen Weber       | 4/​12/​2011 ​    | adding segmentation (SPM-based) to the HDR menu  | in pipeline ​ |
-| CreateSMP from VMP to AFT  | Jochen Weber      | 4/​12/​2011 ​    | change the code so that it works for all map type objects (incl. CMP, GLM, HEAD, HDR, VMP)  | in pipeline ​ | 
 | ComputeFormula also for SMP  | Jochen Weber    | 4/​12/​2011 ​    | add support for SMP::​ComputeFormula (either different or combined implementation ​ | in pipeline ​ | | ComputeFormula also for SMP  | Jochen Weber    | 4/​12/​2011 ​    | add support for SMP::​ComputeFormula (either different or combined implementation ​ | in pipeline ​ |
 | physio confounds ​         | Lauren Atlas       | 4/​18/​2011 ​    | support to automatically create confound regressors from physio (ECG) data, still needs specs! ​ | in pipeline ​ | | physio confounds ​         | Lauren Atlas       | 4/​18/​2011 ​    | support to automatically create confound regressors from physio (ECG) data, still needs specs! ​ | in pipeline ​ |
 | better subject-specific VOI support ​ | Hakwan Lau  | 4/​18/​2011 ​ | support for subject specific VOIs in ne_mdmvoicondavg -> MDM::​VOITimeCourses,​ and throughout ​ | in pipeline ​ | | better subject-specific VOI support ​ | Hakwan Lau  | 4/​18/​2011 ​ | support for subject specific VOIs in ne_mdmvoicondavg -> MDM::​VOITimeCourses,​ and throughout ​ | in pipeline ​ |
-| NII export support for GLM/VMP formats ​ | Hakwan Lau  | 4/​18/​2011 ​ | so far, the output method is limited to HDR/IMG, also support NII (checking that exported files contain valid transformation matrix!) ​ | in pipeline ​ | 
 | VOI time course plot      | Jochen Weber       | 4/​20/​2011 ​    | option to plot VOI time courses (probably from within ne_mdmvoicondavg dialog), incl. PRT information ​ | in pipeline ​ | | VOI time course plot      | Jochen Weber       | 4/​20/​2011 ​    | option to plot VOI time courses (probably from within ne_mdmvoicondavg dialog), incl. PRT information ​ | in pipeline ​ |
-| legend on bar plot        | SCAN Unit          | 4/​20/​2011 ​    | add optional legend to bar plot  | in pipeline ​ | 
 | multi-study (MDM) dialog enhancements ​ | SCAN Unit  | 4/​20/​2011 ​ | add RunTimeVars.Discard inspection/​update feature into dialog; also feature to see condition names from models, options for single-trial GLM and PPI  | in pipeline ​ | | multi-study (MDM) dialog enhancements ​ | SCAN Unit  | 4/​20/​2011 ​ | add RunTimeVars.Discard inspection/​update feature into dialog; also feature to see condition names from models, options for single-trial GLM and PPI  | in pipeline ​ |
 | fmriqasheet enhancements/​fix ​ | SCAN Unit      | 4/​20/​2011 ​    | 1. percentage of outlier volumes is incorrect; 2. UI should get a dialog to assess multiple scans, give results for multiple scans, have options (e.g. realignment);​ 3. link fmriqasheet output to object.RunTimeVars.Discard field  | in pipeline ​ | | fmriqasheet enhancements/​fix ​ | SCAN Unit      | 4/​20/​2011 ​    | 1. percentage of outlier volumes is incorrect; 2. UI should get a dialog to assess multiple scans, give results for multiple scans, have options (e.g. realignment);​ 3. link fmriqasheet output to object.RunTimeVars.Discard field  | in pipeline ​ |
 | SDM::​CalcBetas ​           | SCAN Unit          | 4/​20/​2011 ​    | make it optional to first project out confounds (filters, motion) of both data and remaining model and then perform regression (thorough testing after implementation!!) ​ | in pipeline ​ | | SDM::​CalcBetas ​           | SCAN Unit          | 4/​20/​2011 ​    | make it optional to first project out confounds (filters, motion) of both data and remaining model and then perform regression (thorough testing after implementation!!) ​ | in pipeline ​ |
 | SDM::​CalcBetas check/​fix ​ | Jochen Weber       | 5/​20/​2010 ​    | after code inspection, I realized that some features only exist in the help (masking/​thresholding/​global signal as nuisance); adding that code!! ​ | in pipeline ​ | | SDM::​CalcBetas check/​fix ​ | Jochen Weber       | 5/​20/​2010 ​    | after code inspection, I realized that some features only exist in the help (masking/​thresholding/​global signal as nuisance); adding that code!! ​ | in pipeline ​ |
-| mutliple scatters ​        | Jen Silvers ​       | 5/​18/​2010 ​    | ability to plot several, independent scatter plots in the GUI (e.g. for multiple groups of subjects or to compare conditions; interface still requires specification! probably define separate scatter types/​colors per group with default being using the same; if split perform regression per group  | in pipeline ​ | 
 | local storage of configs ​ | Nick Ketz          | 5/​18/​2010 ​    | in a network-based software setup (central installation of NeuroElf), the configuration files are currently shared (as they live in the installation folder); either make the filenames local (e.g. based on username) or store locally (in user folder) ​ | in pipeline ​ | | local storage of configs ​ | Nick Ketz          | 5/​18/​2010 ​    | in a network-based software setup (central installation of NeuroElf), the configuration files are currently shared (as they live in the installation folder); either make the filenames local (e.g. based on username) or store locally (in user folder) ​ | in pipeline ​ |
 | spm5_prepro enhancement ​  | Jen Silvers ​       | 6/​8/​2010 ​     | option to set a filename pattern for the VTCs that are created after preprocessing ​ | in pipeline ​ | | spm5_prepro enhancement ​  | Jen Silvers ​       | 6/​8/​2010 ​     | option to set a filename pattern for the VTCs that are created after preprocessing ​ | in pipeline ​ |
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 | importvmp dialog enhancement ​ | Hedy Kober     | 5/​18/​2010 ​    | allowing the user to specify Analyze/​NIftI files containing maps from several folders ​ | in pipeline ​ | | importvmp dialog enhancement ​ | Hedy Kober     | 5/​18/​2010 ​    | allowing the user to specify Analyze/​NIftI files containing maps from several folders ​ | in pipeline ​ |
 | normalization check       | Jochen Weber       | 5/​18/​2010 ​    | automatic generation (update) of a multi-subject/​multi-session VTC (or other format) to quickly verify (via eyeballing) that the normalization has worked alright ​ | in pipeline ​ | | normalization check       | Jochen Weber       | 5/​18/​2010 ​    | automatic generation (update) of a multi-subject/​multi-session VTC (or other format) to quickly verify (via eyeballing) that the normalization has worked alright ​ | in pipeline ​ |
-| full support for 3D/4D HDR/NII MAT files  | Jochen Weber  | 4/​12/​2011 ​ | support for SPM's 4D (and older 3D) MAT files with (different) quaternion matrices for each volume (sampling, updating, etc.)  | in pipeline ​ | 
 | weighted data             | Jochen Weber       | 4/​12/​2011 ​    | start with data acquisition,​ weights = 1, then, during each processing/​analysis step, carry over weights as estimate of plausibility of data; use weights for all subsequent steps  | not sure yet  | | weighted data             | Jochen Weber       | 4/​12/​2011 ​    | start with data acquisition,​ weights = 1, then, during each processing/​analysis step, carry over weights as estimate of plausibility of data; use weights for all subsequent steps  | not sure yet  |
 | VTC/​VOI-network analysis ​ | Jochen Weber       | 4/​12/​2011 ​    | different options to assess suspected network nodes of VOIs (correlation matrices, differences in correlations across conditions, Granger, SEM?, robust option, etc.)  | not sure yet  | | VTC/​VOI-network analysis ​ | Jochen Weber       | 4/​12/​2011 ​    | different options to assess suspected network nodes of VOIs (correlation matrices, differences in correlations across conditions, Granger, SEM?, robust option, etc.)  | not sure yet  |
-| flexplot ​                 | Jochen Weber       | 4/​12/​2011 ​    | flexible plotting function that handles time courses (incl. patches), scatters, bars, etc. with unified syntax and framework, as well as "data source"​ options (object, method, arguments, etc.)  | not yet sure  | 
  
  
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 | combining VMPs (in GUI)   | Hedy Kober         | 5/​18/​2010 ​    | dialog that allows to flexibly combine maps from several VMP containers ​ | v0.9b SNAPSHOT ​ | | combining VMPs (in GUI)   | Hedy Kober         | 5/​18/​2010 ​    | dialog that allows to flexibly combine maps from several VMP containers ​ | v0.9b SNAPSHOT ​ |
 | importrfxglm bug fix      | Jochen Weber       | 5/​18/​2010 ​    | currently the condition selection in importrfxglmfromspms does not allow to specify the conditions to be imported; while they can be easily removed after the import is complete, it would of course be nicer for that feature to work!  | v0.9c  | | importrfxglm bug fix      | Jochen Weber       | 5/​18/​2010 ​    | currently the condition selection in importrfxglmfromspms does not allow to specify the conditions to be imported; while they can be easily removed after the import is complete, it would of course be nicer for that feature to work!  | v0.9c  |
 +| CreateSMP from VMP to AFT  | Jochen Weber      | 4/​12/​2011 ​    | change the code so that it works for all map type objects (incl. CMP, GLM, HEAD, HDR, VMP)  | v0.9c  |
 +| NII export support for GLM/VMP formats ​ | Hakwan Lau  | 4/​18/​2011 ​ | so far, the output method is limited to HDR/IMG, also support NII (checking that exported files contain valid transformation matrix!) ​ | v0.9c  |
 +| mutliple scatters ​        | Jen Silvers ​       | 5/​18/​2010 ​    | ability to plot several, independent scatter plots in the GUI (e.g. for multiple groups of subjects or to compare conditions; interface still requires specification! probably define separate scatter types/​colors per group with default being using the same; if split perform regression per group  | v0.9c  |
 +| legend on bar plot        | SCAN Unit          | 4/​20/​2011 ​    | add optional legend to bar plot  | v0.9c SNAPSHOT ​ |
 +| full support for 3D/4D HDR/NII MAT files  | Jochen Weber  | 4/​12/​2011 ​ | support for SPM's 4D (and older 3D) MAT files with (different) quaternion matrices for each volume (sampling, updating, etc.)  | v0.9c SNAPSHOT ​ |
  
neuroelf_feature_requests.1303352006.txt.gz ยท Last modified: 2011/04/21 04:13 (external edit)