Differences

This shows you the differences between two versions of the page.

--- neuroelf_gui_-_menu_tree [2011/05/07 19:59] – added new options (v0.9c) jochen
+++ neuroelf_gui_-_menu_tree [2011/12/08 22:28] (current) – added MKDA to the list jochen
@@ Line 17: / Line 17: @@
   * **Recently loaded surface objects** - a sub-menu populated with surface files that were recently opened (stored in setting ''SurfVar'')
   * **Recently loaded surface stats objects** - a sub-menu populated with surface-based statistics files that were recently opened (stored in setting ''SurfStatsVar'')
-  * **Colin-27 dataset** - a sub-menu populated with the files found in the ''_files/colin/' sub-folder of the NeuroElf installation folder (in two sub-menus: **VMRs** and **Surfaces**)
+  * **Colin-27 dataset** - a sub-menu populated with the files found in the ''_files/colin/'' sub-folder of the NeuroElf installation folder (in two sub-menus: **VMRs** and **Surfaces**)
   * **Clone slicing object** - creates a copy of the currently selected slicing (voxel-based anatomical or functional) object, e.g. to allow painting into the object with the ability to compare "before" and "after" stages; this **does not** copy the filename association (and thus, the object requires to be "saved as...")
+  * **New slicing object (empty VMR)** - creates a new (all-blank/empty) VMR, which can be used as the starting point of a segmentation (using the Underlay feature, which then also works with other object types); importantly, **the new VMR has to be saved to allow reload from disk!**
   * **Reload slicing object** - reloads the content of the currently selected slicing object from disk (only functional if the object has been loaded or saved before and a filename associated with it)
+  * **Clone stats object** - creates a copy of the currently selected statistical (voxel-based) object, e.g. to allow using several beta plot windows on the same GLM data
   * **Reload stats object** - reloads the content of the currently selected (voxel-based) statistical object from disk (same restriction applies)
   * **Set underlay object** - sets a secondary object which is display //below// (underlaying) the current selected anatomical slicing object (the way in which the two datasets are blended can be controlled via the **File -> Options -> Underlay blending mode** sub-menu)
@@ Line 52: / Line 54: @@
     * **Stats Colors (LUT)** - a sub-menu populated with the OLT (overlay look-up table) files available in the ''_core/lut'' folder of the NeuroElf installation; for each of the sub-entries, the currently selected ''Map'' (only functional if exactly one map is selected) will have its ''LUTName'' property set, followed by a call to ''object.SetColors'', which will update the coloring of the map if, and only if, the map's ''UseRGBColor'' property is set to 0 (changeable by clicking on the ''LUT'' radio button on the interface)
     * **Edit LUT palette** - allows to edit the currently selected LUT palette using the [[colorpicker]] function/UI (if 20 colors, used for VMR coloring)
-    * *Underlay blending mode** - a sub-menu with 7 different settings on how the underlay object (if selected) is blended with the currently selected anatomical slicing object
+    * **Underlay blending mode** - a sub-menu with 7 different settings on how the underlay object (if selected) is blended with the currently selected anatomical slicing object
       * **Overlay wins** - wherever the overlay (selected object) has a voxel color that is not all-0, this value will be display, the underlay value otherwise
       * **Overlay favored** - the higher the maximum RGB color value of the overlay (select object) voxel is, the more this object's color dominates the mix
@@ Line 116: / Line 118: @@
 ===== Statistics menu =====
 **//This menu is only visible when the GUI is in [[NeuroElf GUI#minimized_mode|minimized mode]]!//**
-  * **Close OBJ** - closes (unloads) the currently selected voxel-based statistical object (if the object was created by the GUI during the current session, the object will also be cleared and its memory freed)
+  * **Close OBJ** - closes (unloads) the currently selected voxel-based or surface-based statistical object (if the object was created by the GUI during the current session, the object will also be cleared and its memory freed)
   * **Map properties** - invokes the map properties edit dialog (**only visible when exactly one map of a VMP object is selected**)
   * **Compute formula** - invokes the [[vmp.ComputeFormula|AFT::ComputeFormula]] interface (**only visible when a HDR/HEAD/VMP object is selected**)
-  * **Switch to stats object** - a sub-menu populated with a list of currently loaded voxel-based statistics objects
+  * **Clustertable** - emulates a click on the (voxel and/or surface based!) Clustertable button and prints out the table in the console window
-  * **Select map** - a (list of) sub-menu(s) populated with a list of the map names of the currently selected voxel-based statistics object (with selected maps being checked)
+  * **Create SMP from selected maps** - emulates a click on the SMP-creation button (only for HDR/HEAD/VMP objects)
+  * **Switch to stats object** - a sub-menu populated with a list of currently loaded voxel-based/matching surface-based statistics objects
+  * **Select map** - a (list of) sub-menu(s) populated with a list of the map names of the currently selected statistics object (with selected maps being checked)
   * **Multi-select maps** - opens a listbox dialog that allows to select multiple maps
   * **Select CONDITION for all subjects** - allows to copy map selection of one subject across subjects (**only visible when a RFX-GLM object is selected**)
@@ Line 130: / Line 134: @@
   * **Single-level RFX mediation** - this will open up the [[neuroelf_gui - RFX mediation|RFX mediation UI]] (which requires at least one RFX-GLM to be loaded; if several RFX-GLMs are loaded, the user can choose between these in the UI)
   * **ECG Heart-rate data analysis** - this will open up the [[neuroelf_gui - ECG/GSR data analysis|ECG/GSR data analysis UI]]
+  * **Meta Analysis** - this will open up the [[neuroelf_gui - MKDA UI|Multi-level Kernel Density Analysis (MKDA) UI]]
 ===== Visualization menu =====