Differences

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--- processing_stream_-_image_file_conversion [2010/05/26 17:23] – added the depth argument to findfiles jochen
+++ processing_stream_-_image_file_conversion [2010/05/26 17:35] – Yet another correction for the search folders... jochen
@@ Line 34: / Line 34: @@
 % find all folders that contain DICOM import files (sessions)
-importdirs = findfiles([pwd '/CHIP*/func/raw'], '*', 'dirs=1', 'depth=1');
+importdirs = findfiles([pwd '/CHIP*/raw'], '*r*', 'dirs=1', 'depth=1');
 % remove subjects that have already been imported
-donedirs = findfiles([pwd '/CHIP*/func'], 'run*', 'dirs=1', 'depth=1');
+donedirs = findfiles([pwd '/CHIP*/func'], 'r*', 'dirs=1', 'depth=1');
 for dc = 1:numel(donedirs)
     % take out those which match the CHIP* part
-    [study, chip] = fileparts(fileparts(donedirs{dc}));
+    [study, chip] = fileparts(fileparts(fileparts(donedirs{dc})));
     importdirs(~isemptycell(regexp(importdirs, chip))) = [];
 end
@@ Line 49: / Line 49: @@
     % find dicom files
-    dcmfiles = findfiles(importdirs{dc}, '*.dcm');
+    dcmfiles = findfiles(importdirs{dc}, '*.dcm', 'depth=1');
     % no files, continue
@@ Line 58: / Line 58: @@
     % figure out the target folder
     [study, target] = fileparts(fileparts(dcmfiles{1}));
+    % re-vamp the target folder name (which for us is NUMVOLr_NUMSCAN)
+    target_particles = regexp(target, '^(\d+)r_(\d+)$', 'tokens');
+    if isempty(target_particles) || ...
+        numel(target_particles{1}) ~= 2
+        continue;
+    end
+    target = sprintf('r%02d_%03d', ...
+        str2double(target_particles{1}{2}), ...
+        str2double(target_particles{1}{1}));
     % create target folder
-    target = [fileparts(study) '/run_' target];
+    target = [fileparts(study) '/func/' target];
     mkadir(target);