Differences

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--- ajay:neuroelf_usage_notes [2014/03/24 15:18] – [Using the voxel rendering] ajay
+++ ajay:neuroelf_usage_notes [2016/08/03 20:26] – [Scripting and Batching: Dangers] ajay
@@ Line 469: / Line 469: @@
-==== Scripting and Batching: Dangers  ====
+==== Scripting and Batching: Tips and Pitfalls ====
-Sometimes we may want to run multiple glms changing one or another option.
-If this is what you want to do, BE SURE TO DO THESE TWO THINGS
+Verify the parameters for you GLM. In the command line, once you load the glm (E.g. by using >>glm = xff('*.glm')), you can ensure the parameters (e.g. motion correction as covariates, percent signal change transform, filter type and implementation, etc.) using the following two locations in the glm object.
+  - glm.Study(1).RunTimeVars.Predictors'
+  - glm.RunTimeVars
+Sometimes we may want to run multiple glms changing one or another option. If so, BE SURE TO DO THESE TWO THINGS:
   - clear the object between analyses. glm.ClearObject; mdm.ClearObject;
   - 'bless' the command where you run the mdm: glm = bless(mdm.ComputeGLM(opts));
@@ Line 480: / Line 483: @@
   - INCORRECT: struct('tfilter',200,'tfilttype','dct','motpars',rps)
   - where rps is a cell array pointing to files name for realignment parameters
+  - VERIFY YOUR GLM