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| start [2011/04/20 16:28] – jochen | start [2016/05/27 15:19] (current) – [User's corner] jochen | ||
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| ====== NeuroElf wiki ====== | ====== NeuroElf wiki ====== | ||
| - | {{http:// | + | {{http:// |
| Below you can find a preliminary and manually maintained table of contents. This means that in case you create a new article when you write up your own piece of documentation, | Below you can find a preliminary and manually maintained table of contents. This means that in case you create a new article when you write up your own piece of documentation, | ||
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| * [[Uploading image files]] | * [[Uploading image files]] | ||
| + | ==== Matlab basics ==== | ||
| + | * [[Matlab - introduction|Introduction]] | ||
| + | * [[Matlab - help|Help - where to find information on a topic?]] | ||
| + | * [[Matlab - language|Matlab' | ||
| + | * [[Matlab - datatypes|Variables, | ||
| + | * [[Matlab - expressions|Expressions]] | ||
| + | * [[Matlab - precedence|Precedence - operators and identifiers]] | ||
| + | * [[Matlab - M-files|M-files]] | ||
| + | * [[Matlab - debugging|Debugging]] | ||
| + | * [[Matlab - control structures|Control structures]] | ||
| + | * [[Matlab - handles|Handles]] | ||
| + | * [[Matlab - classes|Classes]] | ||
| + | * [[Matlab - overloading|Overloading of functions and methods]] | ||
| + | * [[Matlab - profiler|Profiler - cleaning up code]] | ||
| ==== NeuroElf internals ==== | ==== NeuroElf internals ==== | ||
| * [[NeuroElf introduction|Introduction]] (basic info, etc.) | * [[NeuroElf introduction|Introduction]] (basic info, etc.) | ||
| * [[NeuroElf installation|Installation]] (instructions for both installer and flat folder/ | * [[NeuroElf installation|Installation]] (instructions for both installer and flat folder/ | ||
| * [[NeuroElf MEX files|Compiling MEX files]] (some hints if compiling fails) | * [[NeuroElf MEX files|Compiling MEX files]] (some hints if compiling fails) | ||
| - | * [[NeuroElf changelog|Changelog]] (latest additions and changes to the toolbox) | + | |
| + | | ||
| * [[NeuroElf features|List of features]] (attempt at a comprehensive overview) | * [[NeuroElf features|List of features]] (attempt at a comprehensive overview) | ||
| + | * [[NeuroElf methods|Methods implemented in NeuroElf]] **(also contains citation references)** | ||
| * [[NeuroElf support|Support]] (reporting errors and problems, [[NeuroElf feature requests|feature requests]]) | * [[NeuroElf support|Support]] (reporting errors and problems, [[NeuroElf feature requests|feature requests]]) | ||
| + | * [[NeuroElf videos|Video tutorials]] (a set of screen-recordings showing various features of NeuroElf) | ||
| * [[NeuroElf license|License and disclaimer]] | * [[NeuroElf license|License and disclaimer]] | ||
| Line 36: | Line 53: | ||
| * Model-based approaches (confirmatory, | * Model-based approaches (confirmatory, | ||
| * Model-free approaches (exploratory, | * Model-free approaches (exploratory, | ||
| + | * Meta-analyses: | ||
| * Output visualization: | * Output visualization: | ||
| * [[Processing stream - scripted|Scripted example]] (taken from my lab) | * [[Processing stream - scripted|Scripted example]] (taken from my lab) | ||
| + | |||
| + | ==== User's corner ==== | ||
| + | * [[ajay: | ||
| + | * [[jochen: | ||
| ===== Graphical User Interface (GUI) ===== | ===== Graphical User Interface (GUI) ===== | ||
| Line 49: | Line 71: | ||
| * [[neuroelf_gui - RFX mediation|RFX (single-level) mediation]] (Analysis menu) | * [[neuroelf_gui - RFX mediation|RFX (single-level) mediation]] (Analysis menu) | ||
| * [[neuroelf_gui - ECG/GSR data analysis|ECG/ | * [[neuroelf_gui - ECG/GSR data analysis|ECG/ | ||
| + | * [[neuroelf_gui - MKDA UI|Multi-level Kernel Density Analysis (MKDA)]] (Analysis menu -> Meta analysis) | ||
| * [[neuroelf_gui - image montage ui|Image montage UI]] (Visualization menu) | * [[neuroelf_gui - image montage ui|Image montage UI]] (Visualization menu) | ||
| * [[neuroelf_gui - rendering ui|Rendering UI]] (Visualization menu / render button) | * [[neuroelf_gui - rendering ui|Rendering UI]] (Visualization menu / render button) | ||
| Line 60: | Line 83: | ||
| * [[Attaching a protocol to a VTC|... attach a protocol to a VTC file]]? | * [[Attaching a protocol to a VTC|... attach a protocol to a VTC file]]? | ||
| * [[Processing stream - quality_assessment|... assess fMRI data quality]]? | * [[Processing stream - quality_assessment|... assess fMRI data quality]]? | ||
| + | * [[Close NeuroElf GUI after clear classes|... close the GUI after accidentally clearing everything? | ||
| * [[NeuroElf GUI - menu tree# | * [[NeuroElf GUI - menu tree# | ||
| * [[Working with statistics|... compute a conjunction map]]? | * [[Working with statistics|... compute a conjunction map]]? | ||
| Line 95: | Line 119: | ||
| * MTC methods: [[mtc.ApplySSM|ApplySSM]], | * MTC methods: [[mtc.ApplySSM|ApplySSM]], | ||
| * NTT methods: [[ntt.ChannelData|ChannelData]], | * NTT methods: [[ntt.ChannelData|ChannelData]], | ||
| - | * PLP methods: [[plp.PlotOnSlice|PlotOnSlice]], | + | * PLP methods: |
| * PRT methods: [[prt.ConvertToMS|ConvertToMS]], | * PRT methods: [[prt.ConvertToMS|ConvertToMS]], | ||
| * SDM methods: [[sdm.AddFilters|AddFilters]], | * SDM methods: [[sdm.AddFilters|AddFilters]], | ||
start.1303316895.txt.gz · Last modified: 2011/04/20 16:28 by jochen