neuroelf_-_all_functions
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| neuroelf_-_all_functions [2010/06/22 04:18] – created jochen | neuroelf_-_all_functions [2011/04/04 20:37] (current) – ameliorated links to constructors of classes jochen | ||
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| - | ====== NeuroElf - all functions (list only) ====== | + | ====== NeuroElf - all functions |
| - | [[acpc2tal]] - convert AC-PC coordinates into TAL coordinates | + | This page can be seen as a whole-sale reference to all function |
| - | [[acsvread]] - reads a text based (non-numeric) csv file | + | |
| - | [[afni_parse]] - internal parser for AFNI HEADer file structures | + | ===== Toolbox base folder, M-file |
| - | [[alphasim]] - simulate noise data to estimate cluster threshold | + | * [[BVQXfile]] - legacy function for BVQXtools users (passes to [[xff]]) |
| - | [[analyze_setendian]] - set endian type for Analyze files | + | * [[ac2vmp]] - convert '' |
| - | [[any2ascii]] - packs simple as well as complex variables into ascii | + | * [[acpc2tal]] - convert AC-PC coordinates into TAL coordinates |
| - | [[applybvtrf]] - apply BV transformation matrix to system coords | + | |
| - | [[applyfdr]] - apply FDR thresholding to given statistic | + | |
| - | [[asciiread]] - reads a textfile into one char array | + | |
| - | [[asciitab]] - create custom ASCII representation of 2-D matrix | + | |
| - | [[asciiwrite]] - writes a textfile from a char array to file | + | * [[analyzetype]] - return properties of analyze image datatype |
| - | [[autocorr]] - estimate auto-correlation in data | + | * [[any2ascii]] - packs simple as well as complex variables into ascii |
| - | averagepmps - average PMP objects and create new object (// | + | |
| - | [[averagevmrs]] - average VMRs | + | |
| - | [[barycoord]] - returns barycentric coordinates of point vs. triangle | + | * [[applyspmsnc]] - apply SPM's spatial normalization ('' |
| - | [[bcc2area]] - lookup TalairachBrain.vmr color codes | + | * [[asciiread]] - reads a textfile into one char array |
| - | [[binread]] - reads a binary into one uint8 array | + | |
| - | [[binwrite]] - writes a binary stream from a char/uint8 array to file | + | |
| - | bitdump - dump bits in a uint buffer (// | + | * [[auroc]] - compute area under ROC |
| - | [[bvcoordconv]] - converting coordinates for BV | + | * [[autocorr]] - estimate auto-correlation in data |
| - | [[bvtrf]] - compile a transformation matrix as in the 3D volume tools | + | |
| - | bvxaddvartofile - add a variable to an existing BVX file (// | + | |
| - | bvxcreatefile - create new BVX file (// | + | |
| - | [[calcbetas]] - perform GLM regression | + | |
| - | [[checkstruct]] - check an 1x1 struct for validity | + | |
| - | [[checksyntax]] - checks a snippet of code for syntax validity | + | |
| - | [[clearxffobjects]] - issue ClearObject call on several objects | + | |
| - | [[clustercoords]] - get list of clusters in volume | + | * [[bstrapbca]] - bootstrap statistic using BCa |
| - | [[clustercoordsc]] - get list of clusters in volume | + | * [[bstrappct]] - bootstrap statistic using percentile |
| - | [[clustermeshmap]] - cluster a SMP/SRF based map | + | * [[bvcoordconv]] - converting coordinates for BV |
| - | [[clustermeshmapbin]] - cluster binary mesh-based map | + | |
| - | [[clustervol]] - cluster volume with threshold | + | |
| - | [[clustervol_struct]] - create cluster struct (cell array) for TW tools | + | |
| - | [[colcode2uint32]] - convert from colcode to uint32 array | + | |
| - | [[colorpicker]] - pick a color from the RGB/HSV color space | + | * [[cellipse]] - confidence ellipse coordinates for scatter plot |
| - | [[computehrv]] - compute HRV from onsets | + | * [[checkstruct]] - check an 1x1 struct for validity |
| - | [[conjval]] - conjugate value (same sign, min abs value with sign) | + | |
| - | [[conjvalp]] - conjugate pvalues (same sign, max value with sign) | + | |
| - | [[conv3d]] - perform 3D convolution | + | |
| - | [[convones]] - convoles a function with a number of consecutive ones | + | |
| - | [[correlinvtstat]] - convert t-statistic into correlation value | + | |
| - | [[correlpvalue]] - pvalue of correlation coefficient | + | |
| - | [[correltstat]] - convert correlation value into t-statistic | + | |
| - | [[corrmap]] - correlation map | + | |
| - | [[cov_nd]] - computes covariance and corrcoefs for vector pairs in N-D | + | |
| - | cpfile - copies a file (// | + | |
| - | crawford_abnorm - calculate Crawford' | + | |
| - | crawford_diff - calculate Crawford' | + | |
| - | crawford_diss - calculate Crawford' | + | |
| - | [[createfmr]] - create a FMR from a set of IMA/DCM files | + | |
| - | [[createmarkervmp]] - create a VMP map with markers (electrode indicators) | + | |
| - | [[createsrf]] - create a SRF object from coordinates and triangles | + | |
| - | [[createvmr]] - create a VMR from a set of IMA/DCM files | + | |
| - | [[csvdbupdate]] - update the data field from CSV files | + | |
| - | [[custom_pwelch]] - compute Welch' | + | |
| - | cutnpastemovie - create an AVI movie from bitmap files (// | + | |
| - | [[ddeblank]] - deblank on both ends of strings | + | |
| - | [[degclust]] - degree of clustering of data | + | |
| - | [[depcorrt]] - dependent correlation comparison t statistic | + | |
| - | detecthandles - detect handles in 3D segmentation (// | + | |
| - | detecthandles_o - detect handles in 3D segmentation (// | + | |
| - | [[dicom4todmr]] - cheap try to convert a DICOM4 file into DMR/DWI | + | |
| - | [[dicom4tofmr]] - cheap try to convert a DICOM4 file into FMR/STC | + | |
| - | [[dilate3d]] - perform 3D dilation with operator | + | |
| - | [[dispslice]] - displays a 2-D dataset as an image | + | |
| - | [[dispslicemovie]] - display slice movie | + | |
| - | [[emptysrf]] - create an empty surface container | + | |
| - | [[erode]] - perform 3D erosion with operator | + | |
| - | [[exceltocoords]] - converts MS-Excel notation into 1x4 double array | + | |
| - | [[extcaller]] - from where was a call issued | + | |
| - | [[fdr_thresholds]] - compute probability thresholds for q(FDR) levels | + | |
| - | [[fendian]] - return an argument suitable for fopen (endianess) | + | |
| - | [[fileguessendian]] - guess endian type of (partial) file content | + | |
| - | [[filesize]] - return a file's size in bytes | + | |
| - | [[fileswapendian]] - swap endian type of (partial) file content | + | * dicom_dic - internally used DICOM dictionary function |
| - | [[findfiledir]] - find a named file or directory | + | * [[dilate3d]] - perform 3D dilation with operator |
| - | [[findfiles]] - Linux/ | + | |
| - | [[findfirst]] - find first (or last) element != 0 in input | + | |
| - | [[fisherr2z]] - convert Pearson correlation into z values | + | * [[dividetrimesh]] - divide triangular mesh into smaller triangles |
| - | [[fitrobustbisquare]] - faster fitting function for robust bisquare | + | * [[emptysrf]] - create an empty surface container |
| - | [[fitrobustbisquare_img]] - faster fitting function for robust bisquare | + | |
| - | [[flexinterp]] - flexible data interpolation (up to 4D) | + | |
| - | [[flexinterpn_demo]] - demonstration of flexinterpn | + | |
| - | [[flexinterpn_method]] - call flexinterpn with one of the typical methods | + | |
| - | [[flexmask]] - flexible data masking | + | |
| - | [[floodfill3]] - keep adjacent values from seed point | + | * [[fieldsize]] - get size of struct field(s) in bytes |
| - | [[fmriqasheet]] - create figure with output of fmriquality | + | * [[fileguessendian]] - guess endian type of (partial) file content |
| - | [[fmriquality]] - get some quality assurance for fMRI data | + | |
| - | [[gammapdf]] - gamma distribution Probability Density Function (PDF) | + | |
| - | [[glmtstat]] - compute GLM t statistic | + | |
| - | [[gluetostring]] - glues a cell array of chars to one delimited char array | + | |
| - | [[gluetostringc]] - C-version of gluetostring | + | |
| - | gradsmooth - apply gradient based smoothing (// | + | |
| - | [[grep]] - GNU utils like grep | + | |
| - | [[gzip]] - console/ | + | |
| - | [[hasfields]] - test whether a struct has the same fields as a template | + | |
| - | [[heartbeats]] - detect heart beats and frequency in physio data | + | * [[flexinterpn]] - flexible data interpolation (up to 4D) (//MEX file stub/help//) |
| - | [[hexdump]] - dump hexadecimal values into string | + | |
| - | [[hrf]] - create canonical HRF shape | + | |
| - | [[hrfboost]] - assume that best fit is the (root of) sum of squares | + | |
| - | [[hxdouble]] - transform a double from/into a readable string | + | |
| - | [[hxsingle]] - transform a single from/into a readable string | + | |
| - | [[icc]] - intraclass correlation calculation | + | |
| - | [[idftextread]] - read a text-converted IDF file (iView X) | + | |
| - | [[image_complexity]] - give image complexity estimate | + | |
| - | [[image_resize]] - resize a HxWxD numeric image to new measures | + | |
| - | [[importbesa]] - import EEG/MEG data from a set of BESA files | + | |
| - | [[importfif]] - import FIF file | + | |
| - | [[importvtcfromanalyze]] - import an FMR from Analzye files | + | |
| - | [[importrfxglmfromspms]] - import SPM beta maps to a BrainVoyager GLM file | + | |
| - | [[importvtcfromanalyze]] - import several Analzye SPM map files | + | |
| - | [[importvmrfromanalyze]] - import a VMR from an Analzye file | + | |
| - | [[importvtcfromanalyze]] - import a VTC from Analzye files | + | |
| - | [[indepcorrz]] - independent correlation comparison z statistic | + | * [[histcount]] - M-file for histcountc MEX function |
| - | [[initialalignment]] - perform the automatic IA | + | * [[hrf]] - create canonical HRF shape |
| - | [[invsystem]] - inverts the output argument order of system(...) | + | |
| - | [[isabsolute]] - returns true if the given path is absolute | + | |
| - | [[isemptycell]] - returns a boolean array with isempty over cells | + | |
| - | [[isinfnan]] - checking whether (any) element(s) are inf/nan | + | * [[icbm2tal]] - apply non-linear normalization parameters from ICBM to TAL space |
| - | [[isrealvarname]] - true for valid variable name | + | * [[icc]] - intraclass correlation calculation |
| - | [[isscalarcell]] - returns a boolean array with isscalar over cells | + | |
| - | [[istransio]] - check (and validate) object | + | |
| - | [[isxff]] - check (and validate) object | + | |
| - | [[isxfigure]] - perform validity check on input | + | * [[image_rotate]] - rotate a HxWxD numeric image |
| - | [[isxini]] - perform validity check on input | + | * [[importbesa]] - import EEG/MEG data from a set of BESA files |
| - | [[joinlayers]] - joining of transimg layers into a HxWx3 image + alpha map | + | |
| - | [[kendtau]] - returns the Kendall tau statistic for two vectors | + | |
| - | [[kendtaupairsign]] - return kendall tau ties-correction value | + | |
| - | [[kendtaut]] - give approximate t-score for kendall tau (via monte-carlo) | + | |
| - | [[kendtauz]] - give approximate z-score for kendall tau (via formula) | + | |
| - | [[kurt]] - compute kurtosis of data | + | |
| - | [[limitrangec]] - limit data to a range | + | |
| - | [[limittorange]] - limit data to percentile range | + | |
| - | [[linscale]] - linear scaling transform | + | |
| - | [[lsqueeze]] - linear squeeze into Nx1 array | + | * [[isBVQXfile]] - legacy function for BVQXtools users (passes to [[isxff]]) |
| - | [[ltriasc]] - ASCII form of a lower triangle matrix (for Mx) | + | * [[isabsolute]] - returns true if the given path is absolute |
| - | [[madist]] - Mahalanobis distance of single data argument | + | * [[isectlp]] - compute intersection of line and plain (multi-dim) |
| - | [[mainver]] - get matlab main version | + | * [[isemptycell]] - returns a boolean array with isempty over cells (//MEX file stub/ |
| - | [[makelabel]] - returns a valid label from input | + | |
| - | [[mappvalue]] - convert stats to pvalue (signed) | + | |
| - | [[maxgrad]] - return maximum direct neighbor gradient (diff) per voxel | + | |
| - | maxpos - return not the max but only the pos (// | + | |
| - | [[meannoinfnan]] - build mean of elements other than Inf/NaN | + | |
| - | [[meanpsctrans]] - perform PSC transformation after regression | + | |
| - | [[medianc]] - picking the median of an array using quickselect | + | |
| - | [[memusage]] - give the current memory usage of the calling function | + | * [[jksample]] - Jack-Knife sampling indices |
| - | [[mergehemivmrs]] - merge segmented VMRs of LH and RH | + | * [[joinlayers]] - joining of transimg layers into a HxWx3 image + alpha map (//MEX file stub/ |
| - | [[mesh_morph]] - morph the coordinates of a mesh | + | |
| - | [[mesh_trianglestoneighbors]] - get mesh neighbors list from triangles | + | |
| - | [[mesh_trimapmesh]] - get triangular mapping for two spherical meshes | + | |
| - | [[minarray]] - minimize array size | + | |
| - | [[minmaxbbox]] - get minimum, maximum bounding box of objects | + | |
| - | [[minmaxmean]] - get min, max, and mean of data array (fast) | + | |
| - | minpos - return not the min but only the pos (// | + | |
| - | [[mkadir]] - create an absolute directory (unlike to MATLAB' | + | |
| - | [[mltype]] - return Matlab' | + | |
| - | [[mni2tal]] - converts coordinates from MNI brain to best Talairach guess | + | |
| - | [[mpackage]] - MatLab Installation Package Generator | + | |
| - | [[mstrrep]] - replace multiple patterns (multi strrep) | + | |
| - | [[mtc_concat]] - concatenate MTCs | + | |
| - | multi_voi_avg | + | |
| - | [[multimatch]] - match two lists of strings and return matched in first | + | |
| - | [[multiset]] - set properties for multiple handles | + | |
| - | [[multislicetovol]] - convert a multislice MxNx1 image file to a XxYxZ 3-D volume | + | |
| - | [[ne_fastica]] - perform ICA with FastICA algorithm | + | |
| - | [[neuroelf_build]] - return the build number of NeuroElf | + | |
| - | [[neuroelf_file]] - return file contents | + | |
| - | [[neuroelf_gui]] - the NeuroElf graphical user interface (GUI) | + | |
| - | [[neuroelf_license]] - display NeuroElf license | + | |
| - | [[neuroelf_makelibs]] - compile MEX functions (mex/ | + | * [[mesh_neighborsarray]] - create a CxN neighbors list (0-filled) |
| - | [[neuroelf_pack]] - create installation/ | + | * [[mesh_reconstruct]] - create direct border reconstruction information |
| - | [[neuroelf_path]] - get path where NeuroElf is installed | + | * [[mesh_trianglestoneighbors]] - get mesh neighbors list from triangles |
| - | [[neuroelf_setup]] - NeuroElf post installation setup | + | |
| - | [[neuroelf_version]] - return the version of NeuroElf | + | |
| - | [[newnatresvmp]] - create natural resolution VMP object | + | |
| - | [[noinfnan]] - replace Inf/ | + | |
| - | [[normvecs]] - normalize vector lengths to 1 | + | |
| - | [[num2strtab]] - creates a tabular data output of a numeric data table | + | |
| - | [[orthimage]] - compute orthogonality matrix (for SPM like display) | + | |
| - | [[orthsdm]] - orthogonalize SDM object in file | + | * [[mmregress]] - multi-model regression |
| - | [[orthvec]] - cheap orthogonalization | + | * [[mni2tal]] - converts coordinates from MNI brain to best Talairach guess |
| - | [[orthvecs]] - orthogonalize vectors against each other | + | |
| - | [[ostype]] - returns information about the currently used OS | + | |
| - | [[osz]] - returns ones(size(svzar)) | + | |
| - | [[packmosaic]] - pack one dimension into one/two other(s) | + | * [[mtimesnd]] |
| - | [[pairs]] - returns the pairs of values in a vector/ | + | |
| - | [[parseformula]] - parse a formula | + | |
| - | parsenumtable - parse a numeric table (// | + | |
| - | [[parseopts]] - parse optional input arguments with defaults | + | |
| - | [[partoanalyze75]] - convert PAR/REC into Analyze 7.5 | + | |
| - | [[pinvc]] - pseudo-inverse using svdc | + | |
| - | [[plotcurves]] - plot different curves and select those of interest | + | |
| - | [[pmfilter]] - apply a poly-mask bias filter to an image | + | |
| - | pmpalignment - compute alignment PMPs (// | + | * [[neuroelf_makefiles]] - create additional files used by NeuroElf |
| - | [[poolgroups]] - pool several sample groups into one stats analysis | + | * [[neuroelf_makelibs]] - compile MEX functions (mex/ |
| - | [[prefilter]] - spike/ | + | |
| - | primes_b - generate list of prime numbers (// | + | |
| - | progresscount - display progress in console as a step based counter (// | + | |
| - | [[psctrans]] - perform PSC transformation on time course | + | |
| - | [[qsort]] - sorting of 1-D vectors | + | * [[newhdr]] - create new HDR/NII object |
| - | [[ranktrans]] - return rank transform of data | + | * [[newhiresvmr]] - create new hi-res VMR |
| - | [[rbalign]] - rigid-body alignment of one volume to a volume stack | + | * [[newnatresvmp]] - create natural resolution VMP object |
| - | [[readbesa]] - read in BESA export files for further processing | + | |
| - | readhrv - reads a heart rate variability text file (// | + | * [[normcdfc]] - M-file stub for MEX file |
| - | [[readpar]] - read a Philips PAR file | + | * [[normvecs]] - normalize vector lengths to 1 |
| - | [[regress_coords]] - find best matching quaternion t to match coordinates | + | |
| - | [[relfilename]] - build relative filename from two given files | + | |
| - | [[renamedicom]] - rename a dicom file according to a pattern | + | |
| - | [[renamefields]] - renames fields in a struct | + | |
| - | [[renamefile]] - renames a file to another filename | + | |
| - | render_vol - 3-D rendering of an spm_vol struct (// | + | |
| - | [[renderlayers]] - rendering of transimg layers into a HxWx3 uint8 image | + | |
| - | [[resampleaa]] - anti-aliased resampling of data | + | |
| - | [[rmean]] - re-weighted mean | + | |
| - | [[robcorrcoef]] - robust correlation coefficient using bisquare weighting | + | |
| - | [[robscatter]] - scatter data with option of robustfit | + | |
| - | [[robustF]] - compute F scores given robust stats | + | |
| - | [[robustmean]] - robust mean estimation | + | |
| - | [[robustnsamplet]] - performs robust fit and computes t scores | + | |
| - | [[robustnsamplet_img]] - apply robust N-sample test to set of images | + | |
| - | [[robustt]] - compute t scores given robust stats | + | |
| - | [[samplefmrspace]] - samples a data slab at a given set of coordinates | + | |
| - | [[safecon]] - safe contrast computation taking missing values into account | + | |
| - | [[scaledata]] - automatically scale data between gray-scale boundaries | + | |
| - | [[scaleimage]] - automatically scale image data for image | + | |
| - | [[sdist]] - statistics distributions | + | |
| - | selectstruct - select from a struct with a clause (// | + | * [[rangegrid]] - expand 4xD range definition into coordinates (using ndgrid) |
| - | [[setinfnantomean]] - set Inf/NaN in input to mean (over dim) | + | * [[ranktrans]] - return rank transform of data |
| - | [[setinfnantoval]] - set Inf/NaN in input to specific values(s) | + | |
| - | [[showspmrparams]] - display the rp_*.txt files of an SPM preprocessing | + | |
| - | [[showvtcsize]] - displays the sizes of VTCs found on the given path | + | |
| - | [[shrinkfg]] - shrink foreground where no changes to topology are made | + | |
| - | [[skew]] - compute skewness of data | + | * [[reccheck]] - check quality of REC file (using a subset of fmriquality) |
| - | slydetrend - slyly detrends signal (// | + | * [[regress_coords]] - find best matching quaternion t to match coordinates |
| - | [[smoothdata3]] - apply gaussian smoothing to 3D data | + | |
| - | [[smoothest3d]] - estimate smoothness map of residual time course data | + | |
| - | [[smoothkern]] - build N-dim smoothing kernel from FWHM | + | |
| - | [[smoothned]] - smooth non-equidistant data with a gaussian kernel | + | |
| - | [[solvesudoku]] - solve a sudoku puzzle | + | |
| - | [[spatent]] - spatial entropy of map values | + | |
| - | [[spherecoords]] - compute spherical coordinates | + | * [[replacerobmean]] - replace outliers with robust mean estimate |
| - | [[spherecoordsinv]] - compute cartesian coordinates from spherical ones | + | * [[resampleaa]] - anti-aliased resampling of data |
| - | [[spheresrf]] - create a new sphere SRF | + | |
| - | [[spherevmr]] - create a 256x256x256 VMR for spherical region growing | + | |
| - | [[splitclustercoords]] - split coords of one cluster to subclusters | + | |
| - | [[splittocell]] - split a delimited string into a cell array | + | |
| - | [[splittocellc]] - C-version of splittocell | + | |
| - | [[spm5_preprojobs]] - create jobs and jobhelps from options | + | |
| - | [[spmitrf]] - uncompile an affine transformation into paramters | + | |
| - | [[spmmat2prt]] - convert a SPM.mat file into BV's PRT file(s) | + | |
| - | [[spmmat2sdm]] - convert a SPM.mat file into BV's SDM file(s) | + | |
| - | [[spmtrf]] - compile a transformation matrix as in spm | + | |
| - | srfalignment - align surface according to their folding patterns (// | + | |
| - | srfbvxalign - perform alignment of SRFs in a BVX file (// | + | |
| - | [[structdiff]] - compare two structures | + | |
| - | [[subclusters]] - separate mega cluster into sub-clusters | + | |
| - | [[subget]] - get a list of properties as a struct | + | |
| - | [[svdc]] - singular value decomposition | + | |
| - | [[svmpredict]] - train libSVM based classifier | + | |
| - | [[svmtrain]] - train libSVM based classifier | + | |
| - | [[tablesextract]] - create tables and extracts from GLM/VMPs | + | |
| - | [[tal2acpc]] - convert TAL coordinates into AC-PC coordinates | + | |
| - | [[tal2mni]] - converts coordinates from TAL brain to best MNI-space guess | + | |
| - | tcchecksum - checksum using textcrypt (not reliable for binary data) (// | + | |
| - | tcpdump_parse - parse tcpdump outfile (-w) file (// | + | |
| - | [[tcplot]] - plot timecourse data | + | |
| - | [[tdclient]] - send request to internet TDdatabase / local TD | + | |
| - | [[tdlabel]] - get NGM label of coordinate | + | * [[smpdist]] - sample values from a discrete distribution |
| - | [[tdlocal2]] - lookup local TD NiFTi image file for TalLabel | + | * [[solvesudoku]] - solve a sudoku puzzle |
| - | [[tempfilter]] - filter temporal data | + | |
| - | [[textcrypt]] - en/decrypt a text message with a rotating key matrix | + | |
| - | [[textline]] - one line from a multi-line 1xN char array | + | |
| - | [[tfgparse]] - parses a xfigure TFG file into a struct | + | |
| - | [[tfmatrix]] - build 4x4 transformation matrix for different steps | + | |
| - | [[threshlutc]] - converting thresholded map to looked up colors | + | |
| - | [[threshmapc]] - thresholding a double map to 0...1 | + | |
| - | [[transmul]] - return the multiplication of M' * M | + | |
| - | [[u8str2double]] - convert numeric text (of multi-value data) to double | + | |
| - | [[uint322colcode]] - convert from uint32 to colcode array | + | |
| - | [[unpackmosaic]] - unpack mosaic from two dimensions into third | + | |
| - | [[unzerostring]] - removed string part after first (or last) zero | + | |
| - | [[utc]] - return utc-like time code (uint32) | + | |
| - | [[uunion]] - unsorted set union. | + | |
| - | [[varc]] - calculation of variance along dimension | + | |
| - | [[vmrspmcoreg]] - apply SPM's coregistration to two VMRs | + | * stcorrect - slice-time correction with additional options (**NOT YET FUNCTIONAL**) |
| - | [[vmvreadpos]] - read one vertex movie position in a VMV file | + | * [[stoufferz]] - Stouffer' |
| - | [[vmvwritepos]] - write one vertex movie position in a VMV file | + | * [[structdiff]] - compare two structures |
| - | [[vtc_concat]] - concatenate VTCs | + | |
| - | [[winsorize]] - Winsorize data (to numbers of SD by numbers of passes) | + | |
| - | writestcfiles - create STC files from a 4D array (// | + | |
| - | xffcompare - compares two xff objects (or folders with files) (// | + | |
| - | [[xffsrfparseneighbors]] - parse neighbors from SRF file | + | |
| - | [[xffsrfwriteneighbors]] - write neighbors to SRF file | + | |
| - | [[xfigurecallback]] - make sure a callback has its own workspace | + | |
| - | [[zerodstring]] - fill a string with zero chars and fix length | + | * [[tal2icbm]] - apply non-linear normalization from TAL to ICBM/MNI space |
| - | [[zsz]] - returns zeros(size(svzar)) | + | * [[tal2mni]] - converts coordinates from TAL brain to best MNI-space guess |
| - | [[ztrans]] - perform z-transformation on time course | + | |
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| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | | ||
| + | |||
| + | ===== Toolbox base folder, C-based functions ===== | ||
| + | * applyspmsnc.c | ||
| + | * clustercoordsc.c | ||
| + | * conv3d.c | ||
| + | * cov_nd.c | ||
| + | * findfirst.c | ||
| + | * flexinterpn.c | ||
| + | * flexmask.c | ||
| + | * floodfill3c.c | ||
| + | * gluetostringc.c | ||
| + | * histcount.c | ||
| + | * hsvconv.c | ||
| + | * indexarray.c | ||
| + | * isemptycell.c | ||
| + | * isinfnan.c | ||
| + | * isscalarcell.c | ||
| + | * joinlayers.c | ||
| + | * kendtaupairsign.c | ||
| + | * limitrangec.c | ||
| + | * medianc.c | ||
| + | * mesh_morph.c | ||
| + | * mesh_neighborsarray.c | ||
| + | * mesh_reconstruct.c | ||
| + | * mesh_trianglestoneighbors.c | ||
| + | * mesh_trimapmesh.c | ||
| + | * minmaxmean.c | ||
| + | * normcdfc.c | ||
| + | * num2strtab.c | ||
| + | * pinvc.c | ||
| + | * qsort.c | ||
| + | * renderlayers.c | ||
| + | * splittocellc.c | ||
| + | * svdc.c | ||
| + | * svm2x.cpp | ||
| + | * svm3x.cpp | ||
| + | * svm3xmodel.c | ||
| + | * svmpredictc2x.c | ||
| + | * svmpredictc3x.c | ||
| + | * svmreadc3x.c | ||
| + | * svmtrainc2x.c | ||
| + | * svmtrainc3x.c | ||
| + | * svmwritec3x.c | ||
| + | * threshlutc.c | ||
| + | * threshmapc.c | ||
| + | * transmul.c | ||
| + | * u8str2double.c | ||
| + | * varc.c | ||
| + | * xffsrfparseneighborsc.c | ||
| + | * xffsrfwriteneighborsc.c | ||
| + | |||
| + | ===== transimg functions/ | ||
| + | * [[transimg|@transimg/ | ||
| + | * [[@transimg/ | ||
| + | * [[@transimg/ | ||
| + | * [[@transimg/ | ||
| + | * [[@transimg/ | ||
| + | * [[@transimg/ | ||
| + | * [[@transimg/ | ||
| + | * [[@transimg/ | ||
| + | * [[@transimg/ | ||
| + | * [[@transimg/ | ||
| + | * [[@transimg/ | ||
| + | * [[@transimg/ | ||
| + | * [[@transimg/ | ||
| + | * [[@transimg/ | ||
| + | * [[@transimg/ | ||
| + | |||
| + | ===== transio functions ===== | ||
| + | * [[transio|@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | * [[@transio/ | ||
| + | |||
| + | ===== xff functions ===== | ||
| + | * [[xff|@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/eq]] - overload for eq call | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ne]] - overload for ne call | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | |||
| + | ==== xff private functions (besides OBJ::Method files) ==== | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | * [[@xff/ | ||
| + | |||
| + | ===== xfigure functions ===== | ||
| + | * [[xfigure|@xfigure/ | ||
| + | * [[@xfigure/ | ||
| + | * [[@xfigure/ | ||
| + | * [[@xfigure/ | ||
| + | * [[@xfigure/ | ||
| + | * [[@xfigure/ | ||
| + | * [[@xfigure/ | ||
| + | * [[@xfigure/ | ||
| + | * [[@xfigure/ | ||
| + | |||
| + | ===== xini functions ===== | ||
| + | * [[xini|@xini/ | ||
| + | * [[@xini/ | ||
| + | * [[@xini/ | ||
| + | * [[@xini/ | ||
| + | * [[@xini/ | ||
| + | * [[@xini/ | ||
| + | |||
| + | ===== xprogress functions ===== | ||
| + | * [[xprogress|@xprogress/ | ||
| + | * [[@xprogress/ | ||
| + | * [[@xprogress/ | ||
| + | * [[@xprogress/ | ||
neuroelf_-_all_functions.1277180305.txt.gz · Last modified: 2010/06/22 04:18 by jochen
