Differences

This shows you the differences between two versions of the page.

--- neuroelf_gui_-_menu_tree [2011/05/07 20:01] – syntax/formatting typos jochen
+++ neuroelf_gui_-_menu_tree [2011/05/12 06:28] – adapted menu jochen
@@ Line 19: / Line 19: @@
   * **Colin-27 dataset** - a sub-menu populated with the files found in the ''_files/colin/'' sub-folder of the NeuroElf installation folder (in two sub-menus: **VMRs** and **Surfaces**)
   * **Clone slicing object** - creates a copy of the currently selected slicing (voxel-based anatomical or functional) object, e.g. to allow painting into the object with the ability to compare "before" and "after" stages; this **does not** copy the filename association (and thus, the object requires to be "saved as...")
+  * **New slicing object (empty VMR)** - creates a new (all-blank/empty) VMR, which can be used as the starting point of a segmentation (using the Underlay feature, which then also works with other object types); importantly, **the new VMR has to be saved to allow reload from disk!**
   * **Reload slicing object** - reloads the content of the currently selected slicing object from disk (only functional if the object has been loaded or saved before and a filename associated with it)
+  * **Clone stats object** - creates a copy of the currently selected statistical (voxel-based) object, e.g. to allow using several beta plot windows on the same GLM data
   * **Reload stats object** - reloads the content of the currently selected (voxel-based) statistical object from disk (same restriction applies)
   * **Set underlay object** - sets a secondary object which is display //below// (underlaying) the current selected anatomical slicing object (the way in which the two datasets are blended can be controlled via the **File -> Options -> Underlay blending mode** sub-menu)
@@ Line 116: / Line 118: @@
 ===== Statistics menu =====
 **//This menu is only visible when the GUI is in [[NeuroElf GUI#minimized_mode|minimized mode]]!//**
-  * **Close OBJ** - closes (unloads) the currently selected voxel-based statistical object (if the object was created by the GUI during the current session, the object will also be cleared and its memory freed)
+  * **Close OBJ** - closes (unloads) the currently selected voxel-based or surface-based statistical object (if the object was created by the GUI during the current session, the object will also be cleared and its memory freed)
   * **Map properties** - invokes the map properties edit dialog (**only visible when exactly one map of a VMP object is selected**)
   * **Compute formula** - invokes the [[vmp.ComputeFormula|AFT::ComputeFormula]] interface (**only visible when a HDR/HEAD/VMP object is selected**)
-  * **Switch to stats object** - a sub-menu populated with a list of currently loaded voxel-based statistics objects
+  * **Clustertable** - emulates a click on the (voxel and/or surface based!) Clustertable button and prints out the table in the console window
-  * **Select map** - a (list of) sub-menu(s) populated with a list of the map names of the currently selected voxel-based statistics object (with selected maps being checked)
+  * **Create SMP from selected maps** - emulates a click on the SMP-creation button (only for HDR/HEAD/VMP objects)
+  * **Switch to stats object** - a sub-menu populated with a list of currently loaded voxel-based/matching surface-based statistics objects
+  * **Select map** - a (list of) sub-menu(s) populated with a list of the map names of the currently selected statistics object (with selected maps being checked)
   * **Multi-select maps** - opens a listbox dialog that allows to select multiple maps
   * **Select CONDITION for all subjects** - allows to copy map selection of one subject across subjects (**only visible when a RFX-GLM object is selected**)