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| neuroelf_feature_requests [2010/06/28 19:20] – added showspmrparams wish jochen | neuroelf_feature_requests [2011/04/01 21:48] – moved a couple of implemented things from requests to done jochen |
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| //Comment: the fact that most features on the list were requested on May 18th 2010 is because I presented the toolbox to the SCN lab meeting that day...// | //Comment: the fact that most features on the list were requested on May 18th 2010 is because I presented the toolbox to the SCN lab meeting that day...// |
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| | ===== Procedure ===== |
| | In case you have a feature (or file format) request, please follow these steps: |
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| | * check whether (and if so since when) the feature/format you wish to request is already on the list below |
| | * write an email to **//info (AT) neuroelf (DOT) net//**, stating the request (or asking to prioritize the request) |
| | * wait for a reply by email and also... |
| | * check back on this page to see if it's on the list or the status has been updated |
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| ===== Feature requests ===== | ===== Feature requests ===== |
| ^ Feature name ^ Requested by ^ Request date ^ Description ^ Status ^ | ^ Feature name ^ Requested by ^ Request date ^ Description ^ Status ^ |
| | spm5_prepro improvements | Hedy Kober et al. | 5/18/2010 | more flexibility w.r.t. subject normalization (support for EPI template, DARTEL toolbox), text field for number of skipped volumes, setting origins/orientation of source data (fewer problems during normalization/coregistration), option to purge intermediate preprocessing steps (less storage on disk required) | in pipeline | | | spm5_prepro improvements | Hedy Kober et al. | 5/18/2010 | more flexibility w.r.t. subject normalization (support for EPI template, DARTEL toolbox), text field for number of skipped volumes, setting origins/orientation of source data (fewer problems during normalization/coregistration), option to purge intermediate preprocessing steps (less storage on disk required) | in pipeline | |
| | combining VMPs (in GUI) | Hedy Kober | 5/18/2010 | dialog that allows to flexibly combine maps from several VMP containers, if necessary with resampling/relocation of data | in pipeline | | |
| | mutliple scatters | Jen Silvers | 5/18/2010 | ability to plot several, independent scatter plots in the GUI (e.g. for multiple groups of subjects or to compare conditions; interface still requires specification! | in pipeline | | | mutliple scatters | Jen Silvers | 5/18/2010 | ability to plot several, independent scatter plots in the GUI (e.g. for multiple groups of subjects or to compare conditions; interface still requires specification! | in pipeline | |
| | importvmp dialog enhancement | Hedy Kober | 5/18/2010 | allowing the user to specify Analyze/NIftI files containing maps from several folders | in pipeline | | | importvmp dialog enhancement | Hedy Kober | 5/18/2010 | allowing the user to specify Analyze/NIftI files containing maps from several folders | in pipeline | |
| | importrfxglm bug fix | Jochen Weber | 5/18/2010 | currently the condition selection in importrfxglmfromspms does not allow to specify the conditions to be imported; while they can be easily removed after the import is complete, it would of course be nicer for that feature to work! | in pipeline | | | importrfxglm bug fix | Jochen Weber | 5/18/2010 | currently the condition selection in importrfxglmfromspms does not allow to specify the conditions to be imported; while they can be easily removed after the import is complete, it would of course be nicer for that feature to work! | in pipeline | |
| | local storage of configs | Nick Ketz | 5/18/2010 | in a network-based software setup (central installation of NeuroElf), the configuration files are currently shared (as they live in the installation folder); either make the filenames local (e.g. based on username) or store locally (in user folder) | in pipeline | | | local storage of configs | Nick Ketz | 5/18/2010 | in a network-based software setup (central installation of NeuroElf), the configuration files are currently shared (as they live in the installation folder); either make the filenames local (e.g. based on username) or store locally (in user folder) | in pipeline | |
| | add GUI code for MDM::ComputeGLM | Hedy Kober | 5/18/2010 | add the code for the GUI dialog to locate VTC/SDM/PRT/RP files for MDM::ComputeGLM | in pipeline | | |
| | GUI-based origin setting | Jochen Weber | 5/19/2010 | enhanced way to specify the origin and orientation of a dataset by allowing the user to drag (and shift+drag) the dataset for translation (and rotation) | in pipeline | | |
| | SDM::CalcBetas update/fix | Jochen Weber | 5/20/2010 | after code inspection, I realized that some features only exist in the help (masking/thresholding/global signal as nuisance); adding that code!! | in pipeline | | | SDM::CalcBetas update/fix | Jochen Weber | 5/20/2010 | after code inspection, I realized that some features only exist in the help (masking/thresholding/global signal as nuisance); adding that code!! | in pipeline | |
| | spm5_prepro enhancement | Jen Silvers | 6/8/2010 | option to set a filename pattern for the VTCs that are created after preprocessing | in pipeline | | | spm5_prepro enhancement | Jen Silvers | 6/8/2010 | option to set a filename pattern for the VTCs that are created after preprocessing | in pipeline | |
| | showspmrparams enhancement | Hedy Kober | 6/28/2010 | legend next to plots and keeping the colors the same as SPM | in pipeline | | |
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| ==== Potential candidates ==== | ==== Potential candidates ==== |
| ^ Feature name ^ Requested by ^ Request date ^ Description ^ Comment ^ | ^ Feature name ^ Requested by ^ Request date ^ Description ^ Comment ^ |
| | Granger causality | Jochen Weber et al | 5/18/2010 | computing of Granger causality, both in the BrainVoyager pair-wise style, but also in a network-like way (comparable to the toolbox of Anil Seth in Matlab) | needs a lot of research and coding effort, decision pending | | | Granger causality | Jochen Weber et al | 5/18/2010 | computing of Granger causality, both in the BrainVoyager pair-wise style, but also in a network-like way (comparable to the toolbox of Anil Seth in Matlab) | needs a lot of research and coding effort, decision pending | |
| | mediation | Jochen Weber et al | 5/18/2010 | support (or integration) of Tor Wager's mediation toolbox so as to have it work with all supported file formats | probably doable in a few days of coding, very likely | | |
| | improvement of PPI | Ajay Satpute at al | 5/18/2010 | the new PPI-like feature (MDM::ComputeGLM) should be improved (to allow the SPM-typical deconvolution and reconvolution) | will require quite some additional coding | | | improvement of PPI | Ajay Satpute at al | 5/18/2010 | the new PPI-like feature (MDM::ComputeGLM) should be improved (to allow the SPM-typical deconvolution and reconvolution) | will require quite some additional coding | |
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| | flexinterpn multiple kernels | Jochen Weber | 6/19/2010 | option to pass multiple kernels (one per dimension) to flexinterpn, which then allows smoothing in one dimension only | v0.9b SNAPSHOT | | | flexinterpn multiple kernels | Jochen Weber | 6/19/2010 | option to pass multiple kernels (one per dimension) to flexinterpn, which then allows smoothing in one dimension only | v0.9b SNAPSHOT | |
| | plotcurves improvements | Jochen Weber | 6/19/2010 | adding type cue; making spots "fixed" (certain types, such as onset/cue); adding key-commands for "find max in window", "find min in window" | v0.9b SNAPSHOT | | | plotcurves improvements | Jochen Weber | 6/19/2010 | adding type cue; making spots "fixed" (certain types, such as onset/cue); adding key-commands for "find max in window", "find min in window" | v0.9b SNAPSHOT | |
| | | GUI-based origin setting | Jochen Weber | 5/19/2010 | enhanced way to specify the origin and orientation of a dataset by allowing the user to drag (and shift+drag) the dataset for translation (and rotation) //feature implemented differently// | v0.9b SNAPSHOT | |
| | | showspmrparams enhancement | Hedy Kober | 6/28/2010 | legend next to plots and keeping the colors the same as SPM | v0.9b SNAPSHOT | |
| | | mediation | Jochen Weber et al | 5/18/2010 | support (or integration) of Tor Wager's mediation toolbox so as to have it work with all supported file formats //implemented for the RFX-GLM format, currently only single-level mediation// | v0.9b SNAPSHOT | |
| | | add GUI code for MDM::ComputeGLM | Hedy Kober | 5/18/2010 | add the code for the GUI dialog to locate VTC/SDM/PRT/RP files for MDM::ComputeGLM | v0.9b SNAPSHOT | |
| | | GLM::VOITimeCourses | Jochen Weber | 6/30/2010 | ability to extract timecourses from referenced VTCs in a GLM | v0.9b SNAPSHOT | |
| | | combining VMPs (in GUI) | Hedy Kober | 5/18/2010 | dialog that allows to flexibly combine maps from several VMP containers, if necessary with resampling/relocation of data | v0.9b SNAPSHOT | |
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