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neuroelf_gui_-_menu_tree [2011/05/07 22:01] jochen syntax/formatting typos |
neuroelf_gui_-_menu_tree [2011/12/08 23:28] jochen added MKDA to the list |
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* **Colin-27 dataset** - a sub-menu populated with the files found in the ''_files/colin/'' sub-folder of the NeuroElf installation folder (in two sub-menus: **VMRs** and **Surfaces**) | * **Colin-27 dataset** - a sub-menu populated with the files found in the ''_files/colin/'' sub-folder of the NeuroElf installation folder (in two sub-menus: **VMRs** and **Surfaces**) | ||
* **Clone slicing object** - creates a copy of the currently selected slicing (voxel-based anatomical or functional) object, e.g. to allow painting into the object with the ability to compare "before" and "after" stages; this **does not** copy the filename association (and thus, the object requires to be "saved as...") | * **Clone slicing object** - creates a copy of the currently selected slicing (voxel-based anatomical or functional) object, e.g. to allow painting into the object with the ability to compare "before" and "after" stages; this **does not** copy the filename association (and thus, the object requires to be "saved as...") | ||
+ | * **New slicing object (empty VMR)** - creates a new (all-blank/empty) VMR, which can be used as the starting point of a segmentation (using the Underlay feature, which then also works with other object types); importantly, **the new VMR has to be saved to allow reload from disk!** | ||
* **Reload slicing object** - reloads the content of the currently selected slicing object from disk (only functional if the object has been loaded or saved before and a filename associated with it) | * **Reload slicing object** - reloads the content of the currently selected slicing object from disk (only functional if the object has been loaded or saved before and a filename associated with it) | ||
+ | * **Clone stats object** - creates a copy of the currently selected statistical (voxel-based) object, e.g. to allow using several beta plot windows on the same GLM data | ||
* **Reload stats object** - reloads the content of the currently selected (voxel-based) statistical object from disk (same restriction applies) | * **Reload stats object** - reloads the content of the currently selected (voxel-based) statistical object from disk (same restriction applies) | ||
* **Set underlay object** - sets a secondary object which is display //below// (underlaying) the current selected anatomical slicing object (the way in which the two datasets are blended can be controlled via the **File -> Options -> Underlay blending mode** sub-menu) | * **Set underlay object** - sets a secondary object which is display //below// (underlaying) the current selected anatomical slicing object (the way in which the two datasets are blended can be controlled via the **File -> Options -> Underlay blending mode** sub-menu) | ||
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===== Statistics menu ===== | ===== Statistics menu ===== | ||
**//This menu is only visible when the GUI is in [[NeuroElf GUI#minimized_mode|minimized mode]]!//** | **//This menu is only visible when the GUI is in [[NeuroElf GUI#minimized_mode|minimized mode]]!//** | ||
- | * **Close OBJ** - closes (unloads) the currently selected voxel-based statistical object (if the object was created by the GUI during the current session, the object will also be cleared and its memory freed) | + | * **Close OBJ** - closes (unloads) the currently selected voxel-based or surface-based statistical object (if the object was created by the GUI during the current session, the object will also be cleared and its memory freed) |
* **Map properties** - invokes the map properties edit dialog (**only visible when exactly one map of a VMP object is selected**) | * **Map properties** - invokes the map properties edit dialog (**only visible when exactly one map of a VMP object is selected**) | ||
* **Compute formula** - invokes the [[vmp.ComputeFormula|AFT::ComputeFormula]] interface (**only visible when a HDR/HEAD/VMP object is selected**) | * **Compute formula** - invokes the [[vmp.ComputeFormula|AFT::ComputeFormula]] interface (**only visible when a HDR/HEAD/VMP object is selected**) | ||
- | * **Switch to stats object** - a sub-menu populated with a list of currently loaded voxel-based statistics objects | + | * **Clustertable** - emulates a click on the (voxel and/or surface based!) Clustertable button and prints out the table in the console window |
- | * **Select map** - a (list of) sub-menu(s) populated with a list of the map names of the currently selected voxel-based statistics object (with selected maps being checked) | + | * **Create SMP from selected maps** - emulates a click on the SMP-creation button (only for HDR/HEAD/VMP objects) |
+ | * **Switch to stats object** - a sub-menu populated with a list of currently loaded voxel-based/matching surface-based statistics objects | ||
+ | * **Select map** - a (list of) sub-menu(s) populated with a list of the map names of the currently selected statistics object (with selected maps being checked) | ||
* **Multi-select maps** - opens a listbox dialog that allows to select multiple maps | * **Multi-select maps** - opens a listbox dialog that allows to select multiple maps | ||
* **Select CONDITION for all subjects** - allows to copy map selection of one subject across subjects (**only visible when a RFX-GLM object is selected**) | * **Select CONDITION for all subjects** - allows to copy map selection of one subject across subjects (**only visible when a RFX-GLM object is selected**) | ||
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* **Single-level RFX mediation** - this will open up the [[neuroelf_gui - RFX mediation|RFX mediation UI]] (which requires at least one RFX-GLM to be loaded; if several RFX-GLMs are loaded, the user can choose between these in the UI) | * **Single-level RFX mediation** - this will open up the [[neuroelf_gui - RFX mediation|RFX mediation UI]] (which requires at least one RFX-GLM to be loaded; if several RFX-GLMs are loaded, the user can choose between these in the UI) | ||
* **ECG Heart-rate data analysis** - this will open up the [[neuroelf_gui - ECG/GSR data analysis|ECG/GSR data analysis UI]] | * **ECG Heart-rate data analysis** - this will open up the [[neuroelf_gui - ECG/GSR data analysis|ECG/GSR data analysis UI]] | ||
+ | * **Meta Analysis** - this will open up the [[neuroelf_gui - MKDA UI|Multi-level Kernel Density Analysis (MKDA) UI]] | ||
===== Visualization menu ===== | ===== Visualization menu ===== |