Differences

This shows you the differences between two versions of the page.

--- processing_stream_-_scripted [2010/06/09 21:06] – added PRT-creation from onset table jochen
+++ processing_stream_-_scripted [2010/06/09 21:19] – added instructions on how to install the scripts. jochen
@@ Line 11: / Line 11: @@
   * local folder and knowledge about desired structure
   * onsets in a tabular structure where one column codes the subject and negative differences between onset times code the run separation (for an example, see below)
+The scripts presented on this page can be downloaded (click on the filename in the tab above the script), and for bash scripts, please use the following command to make them executable:
+<code bash>chmod 755 SCANUnit_TASK_script.bash</code>
+To allow all users to execute the scripts, simply place them into a non-personal folder (e.g. /usr/local/bin).
+For Matlab scripts, simply make sure they are located on your Matlab path.
 ===== Sub components =====
@@ Line 253: / Line 261: @@
     end
 end</code>
+**Note: the PRT files will be written into the present working directory (unless the SaveAs line is appropriately altered), and they need to be moved or copied into their respective subject's folder!**
+===== Computing an RFX-GLM with VTCs and PRTs =====
+Once all files are in place, the Protocol and VTC files can be used to compute an RFX-GLM. Please follow the instructions given in the example of the [[mdm.ComputeGLM]] method reference page.