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| neuroelf_feature_requests [2011/04/21 02:13] – added requests from CU and SCAN meetings jochen | neuroelf_feature_requests [2011/05/08 02:19] (current) – moved two features to implemented section jochen |
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| ^ Feature name ^ Requested by ^ Request date ^ Description ^ Status ^ | ^ Feature name ^ Requested by ^ Request date ^ Description ^ Status ^ |
| | HDR menu -> segmentation | Jochen Weber | 4/12/2011 | adding segmentation (SPM-based) to the HDR menu | in pipeline | | | HDR menu -> segmentation | Jochen Weber | 4/12/2011 | adding segmentation (SPM-based) to the HDR menu | in pipeline | |
| | CreateSMP from VMP to AFT | Jochen Weber | 4/12/2011 | change the code so that it works for all map type objects (incl. CMP, GLM, HEAD, HDR, VMP) | in pipeline | | |
| | ComputeFormula also for SMP | Jochen Weber | 4/12/2011 | add support for SMP::ComputeFormula (either different or combined implementation | in pipeline | | | ComputeFormula also for SMP | Jochen Weber | 4/12/2011 | add support for SMP::ComputeFormula (either different or combined implementation | in pipeline | |
| | physio confounds | Lauren Atlas | 4/18/2011 | support to automatically create confound regressors from physio (ECG) data, still needs specs! | in pipeline | | | physio confounds | Lauren Atlas | 4/18/2011 | support to automatically create confound regressors from physio (ECG) data, still needs specs! | in pipeline | |
| | better subject-specific VOI support | Hakwan Lau | 4/18/2011 | support for subject specific VOIs in ne_mdmvoicondavg -> MDM::VOITimeCourses, and throughout | in pipeline | | | better subject-specific VOI support | Hakwan Lau | 4/18/2011 | support for subject specific VOIs in ne_mdmvoicondavg -> MDM::VOITimeCourses, and throughout | in pipeline | |
| | NII export support for GLM/VMP formats | Hakwan Lau | 4/18/2011 | so far, the output method is limited to HDR/IMG, also support NII (checking that exported files contain valid transformation matrix!) | in pipeline | | |
| | VOI time course plot | Jochen Weber | 4/20/2011 | option to plot VOI time courses (probably from within ne_mdmvoicondavg dialog), incl. PRT information | in pipeline | | | VOI time course plot | Jochen Weber | 4/20/2011 | option to plot VOI time courses (probably from within ne_mdmvoicondavg dialog), incl. PRT information | in pipeline | |
| | legend on bar plot | SCAN Unit | 4/20/2011 | add optional legend to bar plot | in pipeline | | |
| | multi-study (MDM) dialog enhancements | SCAN Unit | 4/20/2011 | add RunTimeVars.Discard inspection/update feature into dialog; also feature to see condition names from models, options for single-trial GLM and PPI | in pipeline | | | multi-study (MDM) dialog enhancements | SCAN Unit | 4/20/2011 | add RunTimeVars.Discard inspection/update feature into dialog; also feature to see condition names from models, options for single-trial GLM and PPI | in pipeline | |
| | fmriqasheet enhancements/fix | SCAN Unit | 4/20/2011 | 1. percentage of outlier volumes is incorrect; 2. UI should get a dialog to assess multiple scans, give results for multiple scans, have options (e.g. realignment); 3. link fmriqasheet output to object.RunTimeVars.Discard field | in pipeline | | | fmriqasheet enhancements/fix | SCAN Unit | 4/20/2011 | 1. percentage of outlier volumes is incorrect; 2. UI should get a dialog to assess multiple scans, give results for multiple scans, have options (e.g. realignment); 3. link fmriqasheet output to object.RunTimeVars.Discard field | in pipeline | |
| | SDM::CalcBetas | SCAN Unit | 4/20/2011 | make it optional to first project out confounds (filters, motion) of both data and remaining model and then perform regression (thorough testing after implementation!!) | in pipeline | | | SDM::CalcBetas | SCAN Unit | 4/20/2011 | make it optional to first project out confounds (filters, motion) of both data and remaining model and then perform regression (thorough testing after implementation!!) | in pipeline | |
| | SDM::CalcBetas check/fix | Jochen Weber | 5/20/2010 | after code inspection, I realized that some features only exist in the help (masking/thresholding/global signal as nuisance); adding that code!! | in pipeline | | | SDM::CalcBetas check/fix | Jochen Weber | 5/20/2010 | after code inspection, I realized that some features only exist in the help (masking/thresholding/global signal as nuisance); adding that code!! | in pipeline | |
| | mutliple scatters | Jen Silvers | 5/18/2010 | ability to plot several, independent scatter plots in the GUI (e.g. for multiple groups of subjects or to compare conditions; interface still requires specification! probably define separate scatter types/colors per group with default being using the same; if split perform regression per group | in pipeline | | |
| | local storage of configs | Nick Ketz | 5/18/2010 | in a network-based software setup (central installation of NeuroElf), the configuration files are currently shared (as they live in the installation folder); either make the filenames local (e.g. based on username) or store locally (in user folder) | in pipeline | | | local storage of configs | Nick Ketz | 5/18/2010 | in a network-based software setup (central installation of NeuroElf), the configuration files are currently shared (as they live in the installation folder); either make the filenames local (e.g. based on username) or store locally (in user folder) | in pipeline | |
| | spm5_prepro enhancement | Jen Silvers | 6/8/2010 | option to set a filename pattern for the VTCs that are created after preprocessing | in pipeline | | | spm5_prepro enhancement | Jen Silvers | 6/8/2010 | option to set a filename pattern for the VTCs that are created after preprocessing | in pipeline | |
| | importvmp dialog enhancement | Hedy Kober | 5/18/2010 | allowing the user to specify Analyze/NIftI files containing maps from several folders | in pipeline | | | importvmp dialog enhancement | Hedy Kober | 5/18/2010 | allowing the user to specify Analyze/NIftI files containing maps from several folders | in pipeline | |
| | normalization check | Jochen Weber | 5/18/2010 | automatic generation (update) of a multi-subject/multi-session VTC (or other format) to quickly verify (via eyeballing) that the normalization has worked alright | in pipeline | | | normalization check | Jochen Weber | 5/18/2010 | automatic generation (update) of a multi-subject/multi-session VTC (or other format) to quickly verify (via eyeballing) that the normalization has worked alright | in pipeline | |
| | full support for 3D/4D HDR/NII MAT files | Jochen Weber | 4/12/2011 | support for SPM's 4D (and older 3D) MAT files with (different) quaternion matrices for each volume (sampling, updating, etc.) | in pipeline | | |
| | weighted data | Jochen Weber | 4/12/2011 | start with data acquisition, weights = 1, then, during each processing/analysis step, carry over weights as estimate of plausibility of data; use weights for all subsequent steps | not sure yet | | | weighted data | Jochen Weber | 4/12/2011 | start with data acquisition, weights = 1, then, during each processing/analysis step, carry over weights as estimate of plausibility of data; use weights for all subsequent steps | not sure yet | |
| | VTC/VOI-network analysis | Jochen Weber | 4/12/2011 | different options to assess suspected network nodes of VOIs (correlation matrices, differences in correlations across conditions, Granger, SEM?, robust option, etc.) | not sure yet | | | VTC/VOI-network analysis | Jochen Weber | 4/12/2011 | different options to assess suspected network nodes of VOIs (correlation matrices, differences in correlations across conditions, Granger, SEM?, robust option, etc.) | not sure yet | |
| | flexplot | Jochen Weber | 4/12/2011 | flexible plotting function that handles time courses (incl. patches), scatters, bars, etc. with unified syntax and framework, as well as "data source" options (object, method, arguments, etc.) | not yet sure | | |
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| | combining VMPs (in GUI) | Hedy Kober | 5/18/2010 | dialog that allows to flexibly combine maps from several VMP containers | v0.9b SNAPSHOT | | | combining VMPs (in GUI) | Hedy Kober | 5/18/2010 | dialog that allows to flexibly combine maps from several VMP containers | v0.9b SNAPSHOT | |
| | importrfxglm bug fix | Jochen Weber | 5/18/2010 | currently the condition selection in importrfxglmfromspms does not allow to specify the conditions to be imported; while they can be easily removed after the import is complete, it would of course be nicer for that feature to work! | v0.9c | | | importrfxglm bug fix | Jochen Weber | 5/18/2010 | currently the condition selection in importrfxglmfromspms does not allow to specify the conditions to be imported; while they can be easily removed after the import is complete, it would of course be nicer for that feature to work! | v0.9c | |
| | | CreateSMP from VMP to AFT | Jochen Weber | 4/12/2011 | change the code so that it works for all map type objects (incl. CMP, GLM, HEAD, HDR, VMP) | v0.9c | |
| | | NII export support for GLM/VMP formats | Hakwan Lau | 4/18/2011 | so far, the output method is limited to HDR/IMG, also support NII (checking that exported files contain valid transformation matrix!) | v0.9c | |
| | | mutliple scatters | Jen Silvers | 5/18/2010 | ability to plot several, independent scatter plots in the GUI (e.g. for multiple groups of subjects or to compare conditions; interface still requires specification! probably define separate scatter types/colors per group with default being using the same; if split perform regression per group | v0.9c | |
| | | legend on bar plot | SCAN Unit | 4/20/2011 | add optional legend to bar plot | v0.9c SNAPSHOT | |
| | | full support for 3D/4D HDR/NII MAT files | Jochen Weber | 4/12/2011 | support for SPM's 4D (and older 3D) MAT files with (different) quaternion matrices for each volume (sampling, updating, etc.) | v0.9c SNAPSHOT | |
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