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neuroelf_-_all_functions [2010/06/22 06:18]
jochen created
neuroelf_-_all_functions [2011/04/04 22:37] (current)
jochen ameliorated links to constructors of classes
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-====== NeuroElf - all functions (list only====== +====== NeuroElf - all functions ​====== 
-[[acpc2tal]] - convert AC-PC coordinates into TAL coordinates +This page can be seen as a whole-sale reference to all function ​(M-) files of the toolbox. Currently, the documentation is spotty at best... 
-[[acsvread]] - reads a text based (non-numeric) csv file + 
-[[afni_parse]] - internal parser for AFNI HEADer file structures +===== Toolbox base folder, M-file ​list only ====== 
-[[alphasim]] - simulate noise data to estimate cluster threshold +  * [[BVQXfile]] - legacy function for BVQXtools users (passes to [[xff]]) 
-[[analyze_setendian]] - set endian type for Analyze files +  * [[ac2vmp]] - convert ''​activation_clusters''​ MAT file (Tor Wager tools) to VMP 
-[[any2ascii]] - packs simple as well as complex variables into ascii  +  * [[acpc2tal]] - convert AC-PC coordinates into TAL coordinates 
-[[applybvtrf]] - apply BV transformation matrix to system coords +  ​* ​[[acsvread]] - reads a text based (non-numeric) csv file 
-[[applyfdr]] - apply FDR thresholding to given statistic +  ​* ​afni_parse - internal parser for AFNI HEADer file structures 
-[[asciiread]] - reads a textfile into one char array +  ​* ​[[alphasim - extended uses|alphasim]] - simulate noise data to estimate cluster threshold 
-[[asciitab]] - create custom ASCII representation of 2-D matrix +  ​* ​[[analyze_setendian]] - set endian type for Analyze files 
-[[asciiwrite]] - writes a textfile from a char array to file +  * [[analyzetype]] - return properties of analyze image datatype 
-[[autocorr]] - estimate auto-correlation in data +  * [[any2ascii]] - packs simple as well as complex variables into ascii  
-averagepmps - average PMP objects and create new object (//​abandoned for now//) +  ​* ​[[applybvtrf]] - apply BV transformation matrix to system coords 
-[[averagevmrs]] - average VMRs +  ​* ​[[applyfdr]] - apply FDR thresholding to given statistic 
-[[barycoord]] - returns barycentric coordinates of point vs. triangle +  * [[applyspmsnc]] - apply SPM's spatial normalization (''​*_sn.mat''​) to coordinates 
-[[bcc2area]] - lookup TalairachBrain.vmr color codes +  * [[asciiread]] - reads a textfile into one char array 
-[[binread]] - reads a binary into one uint8 array +  ​* ​[[asciitab]] - create custom ASCII representation of 2-D matrix 
-[[binwrite]] - writes a binary stream from a char/uint8 array to file +  ​* ​[[asciiwrite]] - writes a textfile from a char array to file 
-bitdump - dump bits in a uint buffer (//​abandoned for now//) +  * [[auroc]] - compute area under ROC 
-[[bvcoordconv]] - converting coordinates for BV +  * [[autocorr]] - estimate auto-correlation in data 
-[[bvtrf]] - compile a transformation matrix as in the 3D volume tools +  ​* ​averagepmps - average PMP objects and create new object (//​abandoned for now//) 
-bvxaddvartofile - add a variable to an existing BVX file (//​abandoned for now//) +  ​* ​[[averagevmrs]] - average VMRs 
-bvxcreatefile - create new BVX file (//​abandoned for now//) +  ​* ​[[barycoord]] - returns barycentric coordinates of point vs. triangle 
-[[calcbetas]] - perform GLM regression +  ​* ​[[bcc2area]] - lookup TalairachBrain.vmr color codes 
-[[checkstruct]] - check an 1x1 struct for validity +  ​* ​[[binread]] - reads a binary into one uint8 array 
-[[checksyntax]] - checks a snippet of code for syntax validity +  ​* ​[[binwrite]] - writes a binary stream from a char/uint8 array to file 
-[[clearxffobjects]] - issue ClearObject call on several objects +  ​* ​bitdump - dump bits in a uint buffer (//​abandoned for now//) 
-[[clustercoords]] - get list of clusters in volume +  * [[bstrapbca]] - bootstrap statistic using BCa 
-[[clustercoordsc]] - get list of clusters in volume +  * [[bstrappct]] - bootstrap statistic using percentile 
-[[clustermeshmap]] - cluster a SMP/SRF based map +  * [[bvcoordconv]] - converting coordinates for BV 
-[[clustermeshmapbin]] - cluster binary mesh-based map +  ​* ​[[bvtrf]] - compile a transformation matrix as in the 3D volume tools 
-[[clustervol]] - cluster volume with threshold +  ​* ​bvxaddvartofile - add a variable to an existing BVX file (//​abandoned for now//) 
-[[clustervol_struct]] - create cluster struct (cell array) for TW tools +  ​* ​bvxcreatefile - create new BVX file (//​abandoned for now//) 
-[[colcode2uint32]] - convert from colcode to uint32 array +  ​* ​[[calcbetas]] - perform GLM regression 
-[[colorpicker]] - pick a color from the RGB/HSV color space +  * [[cellipse]] - confidence ellipse coordinates for scatter plot 
-[[computehrv]] - compute HRV from onsets +  * [[checkstruct]] - check an 1x1 struct for validity 
-[[conjval]] - conjugate value (same sign, min abs value with sign) +  ​* ​[[checksyntax]] - checks a snippet of code for syntax validity 
-[[conjvalp]] - conjugate pvalues (same sign, max value with sign) +  ​* ​[[clearxffobjects]] - issue ClearObject call on several objects 
-[[conv3d]] - perform 3D convolution +  ​* ​[[clustercoords]] - get list of clusters in volume 
-[[convones]] - convoles a function with a number of consecutive ones +  ​* ​[[clustercoordsc]] - get list of clusters in volume ​(//MEX file stub/​help//​) 
-[[correlinvtstat]] - convert t-statistic into correlation value +  ​* ​[[clustermeshmap]] - cluster a SMP/SRF based map 
-[[correlpvalue]] - pvalue of correlation coefficient +  ​* ​[[clustermeshmapbin]] - cluster binary mesh-based map 
-[[correltstat]] - convert correlation value into t-statistic +  ​* ​[[clustervol]] - cluster volume with threshold 
-[[corrmap]] - correlation map +  ​* ​[[clustervol_struct]] - create cluster struct (cell array) for TW tools 
-[[cov_nd]] - computes covariance and corrcoefs for vector pairs in N-D +  ​* ​[[colcode2uint32]] - convert from colcode to uint32 array 
-cpfile - copies a file (//​**deprecated!** use copyfile instead//​) +  ​* ​[[colorpicker]] - pick a color from the RGB/HSV color space 
-crawford_abnorm - calculate Crawford'​s score abnormality measure (//​abandoned for now//) +  ​* ​[[computehrv]] - compute HRV from onsets 
-crawford_diff - calculate Crawford'​s single case t-score (//​abandoned for now//) +  ​* ​[[conjval]] - conjugate value (same sign, min abs value with sign) 
-crawford_diss - calculate Crawford'​s single case dissociation t-score (//​abandoned for now//) +  ​* ​[[conjvalp]] - conjugate pvalues (same sign, max value with sign) 
-[[createfmr]] - create a FMR from a set of IMA/DCM files +  ​* ​[[conv3d]] - perform 3D convolution ​(//MEX file stub/​help//​) 
-[[createmarkervmp]] - create a VMP map with markers (electrode indicators) +  ​* ​[[convones]] - convoles a function with a number of consecutive ones 
-[[createsrf]] - create a SRF object from coordinates and triangles +  ​* ​[[correlinvtstat]] - convert t-statistic into correlation value 
-[[createvmr]] - create a VMR from a set of IMA/DCM files +  ​* ​[[correlpvalue]] - pvalue of correlation coefficient 
-[[csvdbupdate]] - update the data field from CSV files +  ​* ​[[correltstat]] - convert correlation value into t-statistic 
-[[custom_pwelch]] - compute Welch'​s periodogram power spectrum +  ​* ​[[corrmap]] - correlation map 
-cutnpastemovie - create an AVI movie from bitmap files (//​abandoned for now//) +  ​* ​[[cov_nd]] - computes covariance and corrcoefs for vector pairs in N-D (//MEX file stub/​help//​) 
-[[ddeblank]] - deblank on both ends of strings +  ​* ​cpfile - copies a file (//​**deprecated!** use copyfile instead//​) 
-[[degclust]] - degree of clustering of data +  ​* ​crawford_abnorm - calculate Crawford'​s score abnormality measure (//​abandoned for now//) 
-[[depcorrt]] - dependent correlation comparison t statistic +  ​* ​crawford_diff - calculate Crawford'​s single case t-score (//​abandoned for now//) 
-detecthandles - detect handles in 3D segmentation (//​abandoned for now//) +  ​* ​crawford_diss - calculate Crawford'​s single case dissociation t-score (//​abandoned for now//) 
-detecthandles_o - detect handles in 3D segmentation (//​abandoned for now//) +  ​* ​[[createfmr]] - create a FMR from a set of IMA/DCM files 
-[[dicom4todmr]] - cheap try to convert a DICOM4 file into DMR/DWI +  ​* ​[[createmarkervmp]] - create a VMP map with markers (electrode indicators) 
-[[dicom4tofmr]] - cheap try to convert a DICOM4 file into FMR/STC +  ​* ​[[createsrf]] - create a SRF object from coordinates and triangles 
-[[dilate3d]] - perform 3D dilation with operator +  ​* ​[[createvmr]] - create a VMR from a set of IMA/DCM files 
-[[dispslice]] - displays a 2-D dataset as an image +  ​* ​[[csvdbupdate]] - update the data field from CSV files 
-[[dispslicemovie]] - display slice movie +  ​* ​[[custom_pwelch]] - compute Welch'​s periodogram power spectrum 
-[[emptysrf]] - create an empty surface container +  ​* ​cutnpastemovie - create an AVI movie from bitmap files (//​abandoned for now//) 
-[[erode]] - perform 3D erosion with operator +  ​* ​[[ddeblank]] - deblank on both ends of strings 
-[[exceltocoords]] - converts MS-Excel notation into 1x4 double array +  ​* ​[[degclust]] - degree of clustering of data 
-[[extcaller]] - from where was a call issued +  ​* ​[[depcorrt]] - dependent correlation comparison t statistic 
-[[fdr_thresholds]] - compute probability thresholds for q(FDR) levels +  ​* ​detecthandles - detect handles in 3D segmentation (//​abandoned for now//) 
-[[fendian]] - return an argument suitable for fopen (endianess) +  ​* ​detecthandles_o - detect handles in 3D segmentation (//​abandoned for now//) 
-[[fileguessendian]] - guess endian type of (partial) file content +  ​* ​[[dicom4todmr]] - cheap try to convert a DICOM4 file into DMR/DWI 
-[[filesize]] - return a file's size in bytes +  ​* ​[[dicom4tofmr]] - cheap try to convert a DICOM4 file into FMR/STC 
-[[fileswapendian]] - swap endian type of (partial) file content +  * dicom_dic - internally used DICOM dictionary function 
-[[findfiledir]] - find a named file or directory +  * [[dilate3d]] - perform 3D dilation with operator 
-[[findfiles]] - Linux/​UNIX-like find command/​function +  ​* ​[[dispslice]] - displays a 2-D dataset as an image 
-[[findfirst]] - find first (or last) element != 0 in input +  ​* ​[[dispslicemovie]] - display slice movie 
-[[fisherr2z]] - convert Pearson correlation into z values +  * [[dividetrimesh]] - divide triangular mesh into smaller triangles 
-[[fitrobustbisquare]] - faster fitting function for robust bisquare +  * [[emptysrf]] - create an empty surface container 
-[[fitrobustbisquare_img]] - faster fitting function for robust bisquare +  ​* ​[[erode3d]] - perform 3D erosion with operator 
-[[flexinterp]] - flexible data interpolation (up to 4D) +  ​* ​[[exceltocoords]] - converts MS-Excel notation into 1x4 double array 
-[[flexinterpn_demo]] - demonstration of flexinterpn +  ​* ​[[extcaller]] - from where was a call issued 
-[[flexinterpn_method]] - call flexinterpn with one of the typical methods +  ​* ​[[fdr_thresholds]] - compute probability thresholds for q(FDR) levels 
-[[flexmask]] - flexible data masking +  ​* ​[[fendian]] - return an argument suitable for fopen (endianess) 
-[[floodfill3]] - keep adjacent values from seed point +  * [[fieldsize]] - get size of struct field(s) in bytes 
-[[fmriqasheet]] - create figure with output of fmriquality +  * [[fileguessendian]] - guess endian type of (partial) file content 
-[[fmriquality]] - get some quality assurance for fMRI data +  ​* ​[[filesize]] - return a file's size in bytes 
-[[gammapdf]] - gamma distribution Probability Density Function (PDF) +  ​* ​[[fileswapendian]] - swap endian type of (partial) file content 
-[[glmtstat]] - compute GLM t statistic +  ​* ​[[findfiledir]] - find a named file or directory 
-[[gluetostring]] - glues a cell array of chars to one delimited char array +  ​* ​[[findfiles]] - Linux/​UNIX-like find command/​function 
-[[gluetostringc]] - C-version of gluetostring +  ​* ​[[findfirst]] - find first (or last) element != 0 in input (//MEX file stub/​help//​) 
-gradsmooth - apply gradient based smoothing (//​abandoned for now//) +  ​* ​[[fisherr2z]] - convert Pearson correlation into z values 
-[[grep]] - GNU utils like grep +  ​* ​[[fitrobustbisquare]] - faster fitting function for robust bisquare 
-[[gzip]] - console/​shell interface for MATLAB (does NOT work on Windows!) +  ​* ​[[fitrobustbisquare_img]] - faster fitting function for robust bisquare 
-[[hasfields]] - test whether a struct has the same fields as a template +  ​* ​[[fitrobustbisquare_multi]] - faster fitting function for robust bisquare multiple models 
-[[heartbeats]] - detect heart beats and frequency in physio data +  * [[flexinterpn]] - flexible data interpolation (up to 4D) (//MEX file stub/help//
-[[hexdump]] - dump hexadecimal values into string +  ​* ​[[flexinterpn_demo]] - demonstration of flexinterpn 
-[[hrf]] - create canonical HRF shape +  ​* ​[[flexinterpn_method]] - call flexinterpn with one of the typical methods 
-[[hrfboost]] - assume that best fit is the (root of) sum of squares +  ​* ​[[flexmask]] - flexible data masking ​(//MEX file stub/​help//​) 
-[[hxdouble]] - transform a double from/into a readable string +  ​* ​[[floodfill3]] - keep adjacent values from seed point 
-[[hxsingle]] - transform a single from/into a readable string +  ​* ​[[fmriqasheet]] - create figure with output of fmriquality 
-[[icc]] - intraclass correlation calculation +  ​* ​[[fmriquality]] - get some quality assurance for fMRI data 
-[[idftextread]] - read a text-converted IDF file (iView X) +  ​* ​[[gammapdf]] - gamma distribution Probability Density Function (PDF) 
-[[image_complexity]] - give image complexity estimate +  ​* ​[[glmtstat]] - compute GLM t statistic 
-[[image_resize]] - resize a HxWxD numeric image to new measures +  ​* ​[[gluetostring]] - glues a cell array of chars to one delimited char array 
-[[importbesa]] - import EEG/MEG data from a set of BESA files +  ​* ​[[gluetostringc]] - C-version of gluetostring ​(//MEX file stub/​help//​) 
-[[importfif]] - import FIF file +  ​* ​gradsmooth - apply gradient based smoothing (//​abandoned for now//) 
-[[importvtcfromanalyze]] - import an FMR from Analzye files +  ​* ​[[grep]] - GNU utils like grep 
-[[importrfxglmfromspms]] - import SPM beta maps to a BrainVoyager GLM file +  ​* ​[[gzip]] - console/​shell interface for MATLAB (does NOT work on Windows!) 
-[[importvtcfromanalyze]] - import several Analzye SPM map files +  ​* ​[[hasfields]] - test whether a struct has the same fields as a template 
-[[importvmrfromanalyze]] - import a VMR from an Analzye file +  ​* ​[[heartbeats]] - detect heart beats and frequency in physio data 
-[[importvtcfromanalyze]] - import a VTC from Analzye files +  ​* ​[[hexdump]] - dump hexadecimal values into string 
-[[indepcorrz]] - independent correlation comparison z statistic +  * [[histcount]] - M-file for histcountc MEX function 
-[[initialalignment]] - perform the automatic IA +  * [[hrf]] - create canonical HRF shape 
-[[invsystem]] - inverts the output argument order of system(...) +  ​* ​[[hrfboost]] - assume that best fit is the (root of) sum of squares 
-[[isabsolute]] - returns true if the given path is absolute +  ​* ​[[hxdouble]] - transform a double from/into a readable string 
-[[isemptycell]] - returns a boolean array with isempty over cells +  ​* ​[[hxsingle]] - transform a single from/into a readable string 
-[[isinfnan]] - checking whether (any) element(s) are inf/nan +  * [[icbm2tal]] - apply non-linear normalization parameters from ICBM to TAL space 
-[[isrealvarname]] - true for valid variable name +  * [[icc]] - intraclass correlation calculation 
-[[isscalarcell]] - returns a boolean array with isscalar over cells +  ​* ​[[idftextread]] - read a text-converted IDF file (iView X) 
-[[istransio]] - check (and validate) object +  ​* ​[[image_complexity]] - give image complexity estimate 
-[[isxff]] - check (and validate) object +  ​* ​[[image_resize]] - resize a HxWxD numeric image to new measures 
-[[isxfigure]] - perform validity check on input +  * [[image_rotate]] - rotate a HxWxD numeric image 
-[[isxini]] - perform validity check on input +  * [[importbesa]] - import EEG/MEG data from a set of BESA files 
-[[joinlayers]] - joining of transimg layers into a HxWx3 image + alpha map +  ​* ​[[importfif]] - import FIF file 
-[[kendtau]] - returns the Kendall tau statistic for two vectors +  ​* ​[[importfmrfromanalyze]] - import an FMR from Analzye files 
-[[kendtaupairsign]] - return kendall tau ties-correction value +  ​* ​[[importrfxglmfromspms]] - import SPM beta maps to a BrainVoyager GLM file 
-[[kendtaut]] - give approximate t-score for kendall tau (via monte-carlo) +  ​* ​[[importvmpfromspms]] - import several Analzye SPM map files 
-[[kendtauz]] - give approximate z-score for kendall tau (via formula) +  ​* ​[[importvmrfromanalyze]] - import a VMR from an Analzye file 
-[[kurt]] - compute kurtosis of data +  ​* ​[[importvtcfromanalyze]] - import a VTC from Analzye files 
-[[limitrangec]] - limit data to a range +  ​* ​[[indepcorrz]] - independent correlation comparison z statistic 
-[[limittorange]] - limit data to percentile range +  ​* ​[[initialalignment]] - perform the automatic IA 
-[[linscale]] - linear scaling transform +  ​* ​[[invsystem]] - inverts the output argument order of system(...) 
-[[lsqueeze]] - linear squeeze into Nx1 array +  * [[isBVQXfile]] - legacy function for BVQXtools users (passes to [[isxff]]) 
-[[ltriasc]] - ASCII form of a lower triangle matrix (for Mx) +  * [[isabsolute]] - returns true if the given path is absolute 
-[[madist]] - Mahalanobis distance of single data argument  +  * [[isectlp]] - compute intersection of line and plain (multi-dim) 
-[[mainver]] - get matlab main version +  * [[isemptycell]] - returns a boolean array with isempty over cells (//MEX file stub/​help//​) 
-[[makelabel]] - returns a valid label from input +  ​* ​[[isinfnan]] - checking whether (any) element(s) are inf/​nan ​(//MEX file stub/​help//​) 
-[[mappvalue]] - convert stats to pvalue (signed) +  ​* ​[[isrealvarname]] - true for valid variable name 
-[[maxgrad]] - return maximum direct neighbor gradient (diff) per voxel +  ​* ​[[isscalarcell]] - returns a boolean array with isscalar over cells (//MEX file stub/​help//​) 
-maxpos - return not the max but only the pos (//​deprecated,​ use minmaxmean instead//​) +  ​* ​[[istransio]] - check (and validate) object 
-[[meannoinfnan]] - build mean of elements other than Inf/NaN +  ​* ​[[isxff]] - check (and validate) object 
-[[meanpsctrans]] - perform PSC transformation after regression +  ​* ​[[isxfigure]] - perform validity check on input 
-[[medianc]] - picking the median of an array using quickselect +  ​* ​[[isxini]] - perform validity check on input 
-[[memusage]] - give the current memory usage of the calling function +  * [[jksample]] - Jack-Knife sampling indices 
-[[mergehemivmrs]] - merge segmented VMRs of LH and RH +  * [[joinlayers]] - joining of transimg layers into a HxWx3 image + alpha map (//MEX file stub/​help//​) 
-[[mesh_morph]] -  morph the coordinates of a mesh +  ​* ​[[kendtau]] - returns the Kendall tau statistic for two vectors 
-[[mesh_trianglestoneighbors]] - get mesh neighbors list from triangles +  ​* ​[[kendtaupairsign]] - return kendall tau ties-correction value (//MEX file stub/​help//​) 
-[[mesh_trimapmesh]] - get triangular mapping for two spherical meshes +  ​* ​[[kendtaut]] - give approximate t-score for kendall tau (via monte-carlo) 
-[[minarray]] - minimize array size +  ​* ​[[kendtauz]] - give approximate z-score for kendall tau (via formula) 
-[[minmaxbbox]] - get minimum, maximum bounding box of objects +  ​* ​[[kurt]] - compute kurtosis of data 
-[[minmaxmean]] - get min, max, and mean of data array (fast) +  ​* ​[[limitrangec]] - limit data to a range (//MEX file stub/​help//​) 
-minpos - return not the min but only the pos (//​deprecated,​ use minmaxmean instead//​) +  ​* ​[[limittorange]] - limit data to percentile range 
-[[mkadir]] - create an absolute directory (unlike to MATLAB'​s mkdir) +  ​* ​[[linscale]] - linear scaling transform 
-[[mltype]] - return Matlab'​s datatype association +  ​* ​[[lsqueeze]] - linear squeeze into Nx1 array 
-[[mni2tal]] - converts coordinates from MNI brain to best Talairach guess +  ​* ​[[ltriasc]] - ASCII form of a lower triangle matrix (for Mx) 
-[[mpackage]] - MatLab Installation Package Generator +  ​* ​[[madistd]] - Mahalanobis distance of single data argument  
-[[mstrrep]] - replace multiple patterns (multi strrep) +  ​* ​[[mainver]] - get matlab main version 
-[[mtc_concat]] - concatenate MTCs +  ​* ​[[makelabel]] - returns a valid label from input 
-multi_voi_avg ​generate Multi-VOI averaging plots (//abandoned for now//+  ​* ​[[mappvalue]] - convert stats to pvalue (signed) 
-[[multimatch]] - match two lists of strings and return matched in first +  ​* ​[[maxgrad]] - return maximum direct neighbor gradient (diff) per voxel 
-[[multiset]] - set properties for multiple handles +  ​* ​maxpos - return not the max but only the pos (//​deprecated,​ use minmaxmean instead//​) 
-[[multislicetovol]] - convert a multislice MxNx1 image file to a XxYxZ 3-D volume +  ​* ​[[meannoinfnan]] - build mean of elements other than Inf/NaN 
-[[ne_fastica]] - perform ICA with FastICA algorithm +  ​* ​[[meanpsctrans]] - perform PSC transformation after regression 
-[[neuroelf_build]] - return the build number of NeuroElf +  ​* ​[[medianc]] - picking the median of an array using quickselect ​(//MEX file stub/​help//​) 
-[[neuroelf_file]] - return file contents +  ​* ​[[memusage]] - give the current memory usage of the calling function 
-[[neuroelf_gui]] - the NeuroElf graphical user interface (GUI) +  ​* ​[[mergehemivmrs]] - merge segmented VMRs of LH and RH 
-[[neuroelf_license]] - display NeuroElf license +  ​* ​[[mesh_morph]] -  morph the coordinates of a mesh (//MEX file stub/​help//​) 
-[[neuroelf_makelibs]] - compile MEX functions (mex/​compiler needed!) +  * [[mesh_neighborsarray]] - create a CxN neighbors list (0-filled) 
-[[neuroelf_pack]] - create installation/​update/​diff package +  * [[mesh_reconstruct]] - create direct border reconstruction information 
-[[neuroelf_path]] - get path where NeuroElf is installed +  * [[mesh_trianglestoneighbors]] - get mesh neighbors list from triangles ​(//MEX file stub/​help//​) 
-[[neuroelf_setup]] - NeuroElf post installation setup +  ​* ​[[mesh_trimapmesh]] - get triangular mapping for two spherical meshes ​(//MEX file stub/​help//​) 
-[[neuroelf_version]] - return the version of NeuroElf +  ​* ​[[minarray]] - minimize array size 
-[[newnatresvmp]] - create natural resolution VMP object +  ​* ​[[minmaxbbox]] - get minimum, maximum bounding box of objects 
-[[noinfnan]] - replace Inf/​NaN'​s in input with replacement value +  ​* ​[[minmaxmean]] - get min, max, and mean of data array (fast) (//MEX file stub/help//
-[[normvecs]] - normalize vector lengths to 1 +  ​* ​minpos - return not the min but only the pos (//​deprecated,​ use minmaxmean instead//​) 
-[[num2strtab]] - creates a tabular data output of a numeric data table +  ​* ​[[mkadir]] - create an absolute directory (unlike to MATLAB'​s mkdir) 
-[[orthimage]] - compute orthogonality matrix (for SPM like display) +  ​* ​[[mltype]] - return Matlab'​s datatype association 
-[[orthsdm]] - orthogonalize SDM object in file +  * [[mmregress]] - multi-model regression 
-[[orthvec]] - cheap orthogonalization +  * [[mni2tal]] - converts coordinates from MNI brain to best Talairach guess 
-[[orthvecs]] - orthogonalize vectors against each other +  ​* ​[[mpackage]] - MatLab Installation Package Generator 
-[[ostype]] - returns information about the currently used OS +  ​* ​[[mstrrep]] - replace multiple patterns (multi strrep) 
-[[osz]] - returns ones(size(svzar)) +  ​* ​[[mtc_concat]] - concatenate MTCs 
-[[packmosaic]] - pack one dimension into one/two other(s) +  * [[mtimesnd]] ​mtimes ​(AxB * BxCover dims 3, 4, ... 
-[[pairs]] - returns the pairs of values in a vector/​matrix +  ​* ​[[multimatch]] - match two lists of strings and return matched in first 
-[[parseformula]] - parse a formula +  ​* ​[[multiset]] - set properties for multiple handles 
-parsenumtable - parse a numeric table (//​deprecated,​ use u8str2double instead//​) +  ​* ​[[multislicetovol]] - convert a multislice MxNx1 image file to a XxYxZ 3-D volume 
-[[parseopts]] - parse optional input arguments with defaults +  ​* ​[[ne_fastica]] - perform ICA with FastICA algorithm 
-[[partoanalyze75]] - convert PAR/REC into Analyze 7.5 +  ​* ​[[neuroelf_build]] - return the build number of NeuroElf 
-[[pinvc]] - pseudo-inverse using svdc +  ​* ​[[neuroelf_file]] - return file contents 
-[[plotcurves]] - plot different curves and select those of interest +  ​* ​[[neuroelf_gui]] - the NeuroElf graphical user interface (GUI) 
-[[pmfilter]] - apply a poly-mask bias filter to an image +  ​* ​[[neuroelf_license]] - display NeuroElf license 
-pmpalignment - compute alignment PMPs (//​abandoned for now//) +  * [[neuroelf_makefiles]] - create additional files used by NeuroElf 
-[[poolgroups]] - pool several sample groups into one stats analysis +  * [[neuroelf_makelibs]] - compile MEX functions (mex/​compiler needed!) 
-[[prefilter]] - spike/​shift/​resonance filter data +  ​* ​[[neuroelf_pack]] - create installation/​update/​diff package 
-primes_b - generate list of prime numbers (//​abandoned for now//) +  ​* ​[[neuroelf_path]] - get path where NeuroElf is installed 
-progresscount - display progress in console as a step based counter (//​abandoned for now//) +  ​* ​[[neuroelf_setup]] - NeuroElf post installation setup 
-[[psctrans]] - perform PSC transformation on time course +  ​* ​[[neuroelf_version]] - return the version of NeuroElf 
-[[qsort]] - sorting of 1-D vectors +  * [[newhdr]] - create new HDR/NII object 
-[[ranktrans]] - return rank transform of data +  * [[newhiresvmr]] - create new hi-res VMR 
-[[rbalign]] - rigid-body alignment of one volume to a volume stack +  * [[newnatresvmp]] - create natural resolution VMP object 
-[[readbesa]] - read in BESA export files for further processing +  ​* ​[[noinfnan]] - replace Inf/​NaN'​s in input with replacement value 
-readhrv - reads a heart rate variability text file (//​abandoned for now//) +  * [[normcdfc]] - M-file stub for MEX file 
-[[readpar]] - read a Philips PAR file +  * [[normvecs]] - normalize vector lengths to 1 
-[[regress_coords]] - find best matching quaternion t to match coordinates +  ​* ​[[num2strtab]] - creates a tabular data output of a numeric data table (//MEX file stub/​help//​) **NOT FUNCTIONAL YET** 
-[[relfilename]] - build relative filename from two given files +  ​* ​[[orthimage]] - compute orthogonality matrix (for SPM like display) 
-[[renamedicom]] - rename a dicom file according to a pattern +  ​* ​[[orthsdm]] - orthogonalize SDM object in file 
-[[renamefields]] - renames fields in a struct +  ​* ​[[orthvec]] - cheap orthogonalization 
-[[renamefile]] - renames a file to another filename +  ​* ​[[orthvecs]] - orthogonalize vectors against each other 
-render_vol - 3-D rendering of an spm_vol struct (//​abandoned for now//) +  ​* ​[[ostype]] - returns information about the currently used OS 
-[[renderlayers]] - rendering of transimg layers into a HxWx3 uint8 image +  ​* ​[[osz]] - returns ones(size(svzar)) 
-[[resampleaa]] - anti-aliased resampling of data +  ​* ​[[packmosaic]] - pack one dimension into one/two other(s) 
-[[rmean]] - re-weighted mean +  ​* ​[[pairs]] - returns the pairs of values in a vector/​matrix 
-[[robcorrcoef]] - robust correlation coefficient using bisquare weighting +  ​* ​[[parseformula]] - parse a formula 
-[[robscatter]] - scatter data with option of robustfit +  ​* ​[[parseopts]] - parse optional input arguments with defaults 
-[[robustF]] - compute F scores given robust stats +  ​* ​[[partoanalyze75]] - convert PAR/REC into Analyze 7.5 
-[[robustmean]] - robust mean estimation +  ​* ​[[pinvc]] - pseudo-inverse using svdc 
-[[robustnsamplet]] - performs robust fit and computes t scores +  ​* ​[[plotcurves]] - plot different curves and select those of interest 
-[[robustnsamplet_img]] - apply robust N-sample test to set of images +  ​* ​[[pmbfilter]] - apply a poly-mask bias filter to an image 
-[[robustt]] - compute t scores given robust stats +  ​* ​pmpalignment - compute alignment PMPs (//​abandoned for now//) 
-[[samplefmrspace]] - samples a data slab at a given set of coordinates +  ​* ​[[poolgroups]] - pool several sample groups into one stats analysis 
-[[safecon]] - safe contrast computation taking missing values into account +  ​* ​[[prefilter]] - spike/​shift/​resonance filter data 
-[[scaledata]] - automatically scale data between gray-scale boundaries +  ​* ​progresscount - display progress in console as a step based counter (//​abandoned for now//) 
-[[scaleimage]] - automatically scale image data for image +  ​* ​[[psctrans]] - perform PSC transformation on time course 
-[[sdist]] - statistics distributions +  ​* ​[[qsort]] - sorting of 1-D vectors ​(//MEX file stub/​help//​) 
-selectstruct - select from a struct with a clause (//​abandoned for now//) +  * [[rangegrid]] - expand 4xD range definition into coordinates (using ndgrid) 
-[[setinfnantomean]] - set Inf/NaN in input to mean (over dim) +  * [[ranktrans]] - return rank transform of data 
-[[setinfnantoval]] - set Inf/NaN in input to specific values(s) +  ​* ​[[rbalign]] - rigid-body alignment of one volume to a volume stack 
-[[showspmrparams]] - display the rp_*.txt files of an SPM preprocessing +  ​* ​[[readbesa]] - read in BESA export files for further processing 
-[[showvtcsize]] - displays the sizes of VTCs found on the given path +  ​* ​readhrv - reads a heart rate variability text file (//​abandoned for now//) 
-[[shrinkfg]] - shrink foreground where no changes to topology are made +  ​* ​[[readpar]] - read a Philips PAR file 
-[[skew]] - compute skewness of data +  * [[reccheck]] - check quality of REC file (using a subset of fmriquality) 
-slydetrend - slyly detrends signal (//​abandoned for now//) +  * [[regress_coords]] - find best matching quaternion t to match coordinates 
-[[smoothdata3]] - apply gaussian smoothing to 3D data +  ​* ​[[relfilename]] - build relative filename from two given files 
-[[smoothest3d]] - estimate smoothness map of residual time course data +  ​* ​[[renamedicom]] - rename a dicom file according to a pattern 
-[[smoothkern]] - build N-dim smoothing kernel from FWHM +  ​* ​[[renamefields]] - renames fields in a struct 
-[[smoothned]] - smooth non-equidistant data with a gaussian kernel +  ​* ​[[renamefile]] - renames a file to another filename 
-[[solvesudoku]] - solve a sudoku puzzle +  ​* ​render_vol - 3-D rendering of an spm_vol struct (//​abandoned for now//) 
-[[spatent]] - spatial entropy of map values +  ​* ​[[renderlayers]] - rendering of transimg layers into a HxWx3 uint8 image (//MEX file stub/​help//​) 
-[[spherecoords]] - compute spherical coordinates +  * [[replacerobmean]] - replace outliers with robust mean estimate 
-[[spherecoordsinv]] - compute cartesian coordinates from spherical ones +  * [[resampleaa]] - anti-aliased resampling of data 
-[[spheresrf]] - create a new sphere SRF +  ​* ​[[rmean]] - re-weighted mean 
-[[spherevmr]] - create a 256x256x256 VMR for spherical region growing +  ​* ​[[robcorrcoef]] - robust correlation coefficient using bisquare weighting 
-[[splitclustercoords]] - split coords of one cluster to subclusters +  ​* ​[[robscatter]] - scatter data with option of robustfit 
-[[splittocell]] - split a delimited string into a cell array +  ​* ​[[robustF]] - compute F scores given robust stats 
-[[splittocellc]] - C-version of splittocell +  ​* ​[[robustmean]] - robust mean estimation 
-[[spm5_preprojobs]] - create jobs and jobhelps from options +  ​* ​[[robustnsamplet]] - performs robust fit and computes t scores 
-[[spmitrf]] - uncompile an affine transformation into paramters +  ​* ​[[robustnsamplet_img]] - apply robust N-sample test to set of images 
-[[spmmat2prt]] - convert a SPM.mat file into BV's PRT file(s) +  ​* ​[[robustt]] - compute t scores given robust stats 
-[[spmmat2sdm]] - convert a SPM.mat file into BV's SDM file(s) +  ​* ​[[samplefmrspace]] - samples a data slab at a given set of coordinates 
-[[spmtrf]] - compile a transformation matrix as in spm +  ​* ​[[safecon]] - safe contrast computation taking missing values into account 
-srfalignment - align surface according to their folding patterns (//​abandoned for now//) +  ​* ​[[scaledata]] - automatically scale data between gray-scale boundaries 
-srfbvxalign - perform alignment of SRFs in a BVX file (//​abandoned for now//) +  ​* ​[[scaleimage]] - automatically scale image data for image 
-[[structdiff]] - compare two structures +  ​* ​[[sdist]] - statistics distributions 
-[[subclusters]] - separate mega cluster into sub-clusters +  ​* ​selectstruct - select from a struct with a clause (//​abandoned for now//) 
-[[subget]] - get a list of properties as a struct +  ​* ​[[setinfnantomean]] - set Inf/NaN in input to mean (over dim) 
-[[svdc]] - singular value decomposition +  ​* ​[[setinfnantoval]] - set Inf/NaN in input to specific values(s) 
-[[svmpredict]] - train libSVM based classifier +  ​* ​[[showspmrparams]] - display the rp_*.txt files of an SPM preprocessing 
-[[svmtrain]] - train libSVM based classifier +  ​* ​[[showvtcsize]] - displays the sizes of VTCs found on the given path 
-[[tablesextract]] - create tables and extracts from GLM/VMPs +  ​* ​[[shrinkfg]] - shrink foreground where no changes to topology are made 
-[[tal2acpc]] - convert TAL coordinates into AC-PC coordinates +  ​* ​[[skew]] - compute skewness of data 
-[[tal2mni]] - converts coordinates from TAL brain to best MNI-space guess +  ​* ​slydetrend - slyly detrends signal (//​abandoned for now//) 
-tcchecksum - checksum using textcrypt (not reliable for binary data) (//​abandoned for now//) +  ​* ​[[smoothdata3]] - apply gaussian smoothing to 3D data 
-tcpdump_parse - parse tcpdump outfile (-w) file (//​abandoned for now//) +  ​* ​[[smoothest3d]] - estimate smoothness map of residual time course data 
-[[tcplot]] - plot timecourse data +  ​* ​[[smoothkern]] - build N-dim smoothing kernel from FWHM 
-[[tdclient]] - send request to internet TDdatabase / local TD +  ​* ​[[smoothned]] - smooth non-equidistant data with a gaussian kernel 
-[[tdlabel]] - get NGM label of coordinate +  * [[smpdist]] - sample values from a discrete distribution 
-[[tdlocal2]] - lookup local TD NiFTi image file for TalLabel +  * [[solvesudoku]] - solve a sudoku puzzle 
-[[tempfilter]] - filter temporal data +  ​* ​[[spatent]] - spatial entropy of map values 
-[[textcrypt]] - en/decrypt a text message with a rotating key matrix +  ​* ​[[spherecoords]] - compute spherical coordinates 
-[[textline]] - one line from a multi-line 1xN char array +  ​* ​[[spherecoordsinv]] - compute cartesian coordinates from spherical ones 
-[[tfgparse]] - parses a xfigure TFG file into a struct +  ​* ​[[spheresrf]] - create a new sphere SRF 
-[[tfmatrix]] - build 4x4 transformation matrix for different steps +  ​* ​[[spherevmr]] - create a 256x256x256 VMR for spherical region growing 
-[[threshlutc]] - converting thresholded map to looked up colors +  ​* ​[[splitclustercoords]] - split coords of one cluster to subclusters 
-[[threshmapc]] - thresholding a double map to 0...1 +  ​* ​[[splittocell]] - split a delimited string into a cell array 
-[[transmul]] - return the multiplication of M' * M +  ​* ​[[splittocellc]] - C-version of splittocell ​(//MEX file stub/​help//​) 
-[[u8str2double]] - convert numeric text (of multi-value data) to double +  ​* ​[[spm5_preprojobs]] - create jobs and jobhelps from options 
-[[uint322colcode]] - convert from uint32 to colcode array +  ​* ​[[spmitrf]] - uncompile an affine transformation into paramters 
-[[unpackmosaic]] - unpack mosaic from two dimensions into third +  ​* ​[[spmmat2prt]] - convert a SPM.mat file into BV's PRT file(s) 
-[[unzerostring]] - removed string part after first (or last) zero +  ​* ​[[spmmat2sdm]] - convert a SPM.mat file into BV's SDM file(s) 
-[[utc]] - return utc-like time code (uint32) +  ​* ​[[spmtrf]] - compile a transformation matrix as in spm 
-[[uunion]] - unsorted set union. +  ​* ​srfalignment - align surface according to their folding patterns (//​abandoned for now//) 
-[[varc]] - calculation of variance along dimension +  ​* ​srfbvxalign - perform alignment of SRFs in a BVX file (//​abandoned for now//) 
-[[vmrspmcoreg]] - apply SPM's coregistration to two VMRs +  * stcorrect - slice-time correction with additional options (**NOT YET FUNCTIONAL**) 
-[[vmvreadpos]] - read one vertex movie position in a VMV file +  * [[stoufferz]] - Stouffer'​s Z computation 
-[[vmvwritepos]] - write one vertex movie position in a VMV file +  * [[structdiff]] - compare two structures 
-[[vtc_concat]] - concatenate VTCs +  ​* ​[[subclusters]] - separate mega cluster into sub-clusters 
-[[winsorize]] - Winsorize data (to numbers of SD by numbers of passes) +  ​* ​[[subget]] - get a list of properties as a struct 
-writestcfiles - create STC files from a 4D array (//​abandoned for now//) +  ​* ​[[svdc]] - singular value decomposition ​(//MEX file stub/​help//​) 
-xffcompare - compares two xff objects (or folders with files) (//​abandoned for now//) +  ​* ​[[svmpredict]] - train libSVM based classifier ​(//MEX file stub/​help//​) 
-[[xffsrfparseneighbors]] - parse neighbors from SRF file +  ​* ​[[svmtrain]] - train libSVM based classifier ​(//MEX file stub/​help//​) 
-[[xffsrfwriteneighbors]] - write neighbors to SRF file +  ​* ​[[tablesextract]] - create tables and extracts from GLM/VMPs 
-[[xfigurecallback]] - make sure a callback has its own workspace +  ​* ​[[tal2acpc]] - convert TAL coordinates into AC-PC coordinates 
-[[zerodstring]] - fill a string with zero chars and fix length +  * [[tal2icbm]] - apply non-linear normalization from TAL to ICBM/MNI space 
-[[zsz]] - returns zeros(size(svzar)) +  * [[tal2mni]] - converts coordinates from TAL brain to best MNI-space guess 
-[[ztrans]] - perform z-transformation on time course+  ​* ​tcchecksum - checksum using textcrypt (not reliable for binary data) (//​abandoned for now//) 
 +  ​* ​tcpdump_parse - parse tcpdump outfile (-w) file (//​abandoned for now//) 
 +  ​* ​[[tcplot]] - plot timecourse data 
 +  ​* ​[[tdclient]] - send request to internet TDdatabase / local TD 
 +  ​* ​[[tdlabel]] - get NGM label of coordinate 
 +  ​* ​[[tdlocal2]] - lookup local TD NiFTi image file for TalLabel 
 +  ​* ​[[tempfilter]] - filter temporal data 
 +  ​* ​[[textcrypt]] - en/decrypt a text message with a rotating key matrix 
 +  ​* ​[[textline]] - one line from a multi-line 1xN char array 
 +  ​* ​[[tfgparse]] - parses a xfigure TFG file into a struct 
 +  ​* ​[[tfmatrix]] - build 4x4 transformation matrix for different steps 
 +  ​* ​[[threshlutc]] - converting thresholded map to looked up colors ​(//MEX file stub/​help//​) 
 +  ​* ​[[threshmapc]] - thresholding a double map to 0...1 (//MEX file stub/​help//​) 
 +  ​* ​[[transmul]] - return the multiplication of M' * M (//MEX file stub/​help//​) 
 +  ​* ​[[u8str2double]] - convert numeric text (of multi-value data) to double ​(//MEX file stub/​help//​) 
 +  ​* ​[[uint322colcode]] - convert from uint32 to colcode array 
 +  ​* ​[[unpackmosaic]] - unpack mosaic from two dimensions into third 
 +  ​* ​[[unzerostring]] - removed string part after first (or last) zero 
 +  ​* ​[[utc]] - return utc-like time code (uint32) 
 +  ​* ​[[uunion]] - unsorted set union. 
 +  ​* ​[[varc]] - calculation of variance along dimension ​(//MEX file stub/​help//​) 
 +  ​* ​[[vmrspmcoreg]] - apply SPM's coregistration to two VMRs 
 +  ​* ​[[vmvreadpos]] - read one vertex movie position in a VMV file 
 +  ​* ​[[vmvwritepos]] - write one vertex movie position in a VMV file 
 +  ​* ​[[vtc_concat]] - concatenate VTCs 
 +  ​* ​[[winsorize]] - Winsorize data (to numbers of SD by numbers of passes) 
 +  ​* ​writestcfiles - create STC files from a 4D array (//​abandoned for now//) 
 +  ​* ​xffcompare - compares two xff objects (or folders with files) (//​abandoned for now//) 
 +  ​* ​[[xffsrfparseneighbors]] - parse neighbors from SRF file (//MEX file stub/​help//​) 
 +  ​* ​[[xffsrfwriteneighbors]] - write neighbors to SRF file (//MEX file stub/​help//​) 
 +  ​* ​[[xfigurecallback]] - make sure a callback has its own workspace 
 +  ​* ​[[zerodstring]] - fill a string with zero chars and fix length 
 +  ​* ​[[zsz]] - returns zeros(size(svzar)) 
 +  ​* ​[[ztrans]] - perform z-transformation on time course 
 + 
 +===== Toolbox base folder, C-based functions ===== 
 +  * applyspmsnc.c 
 +  * clustercoordsc.c 
 +  * conv3d.c 
 +  * cov_nd.c 
 +  * findfirst.c 
 +  * flexinterpn.c 
 +  * flexmask.c 
 +  * floodfill3c.c 
 +  * gluetostringc.c 
 +  * histcount.c 
 +  * hsvconv.c 
 +  * indexarray.c 
 +  * isemptycell.c 
 +  * isinfnan.c 
 +  * isscalarcell.c 
 +  * joinlayers.c 
 +  * kendtaupairsign.c 
 +  * limitrangec.c 
 +  * medianc.c 
 +  * mesh_morph.c 
 +  * mesh_neighborsarray.c 
 +  * mesh_reconstruct.c 
 +  * mesh_trianglestoneighbors.c 
 +  * mesh_trimapmesh.c 
 +  * minmaxmean.c 
 +  * normcdfc.c 
 +  * num2strtab.c 
 +  * pinvc.c 
 +  * qsort.c 
 +  * renderlayers.c 
 +  * splittocellc.c 
 +  * svdc.c 
 +  * svm2x.cpp 
 +  * svm3x.cpp 
 +  * svm3xmodel.c 
 +  * svmpredictc2x.c 
 +  * svmpredictc3x.c 
 +  * svmreadc3x.c 
 +  * svmtrainc2x.c 
 +  * svmtrainc3x.c 
 +  * svmwritec3x.c 
 +  * threshlutc.c 
 +  * threshmapc.c 
 +  * transmul.c 
 +  * u8str2double.c 
 +  * varc.c 
 +  * xffsrfparseneighborsc.c 
 +  * xffsrfwriteneighborsc.c 
 + 
 +===== transimg functions/​methods ===== 
 +  * [[transimg|@transimg/​transimg]] - constructor 
 +  * [[@transimg/​addlayer]] - add a layer to a transimg object 
 +  * [[@transimg/​any2ascii]] - overload for any2ascii call 
 +  * [[@transimg/​delete]] - delete (free) object 
 +  * [[@transimg/​dellayer]] - remove layer(s) from transimg object 
 +  * [[@transimg/​display]] - show object (rendered form) 
 +  * [[@transimg/​handle]] - return internal handle 
 +  * [[@transimg/​joinlayers]] - call joinlayers.MEX on layers of transimg object 
 +  * [[@transimg/​render]] - render object 
 +  * [[@transimg/​setbackground]] - set/alter background color 
 +  * [[@transimg/​sethandle]] - set graphics handle 
 +  * [[@transimg/​setlayer]] - replace layer with new data 
 +  * [[@transimg/​setlayeralpha]] - replace alpha channel of layer with new data 
 +  * [[@transimg/​setlayerpixel]] - replace pixel data of layer with new data 
 +  * [[@transimg/​subsref]] - overload for subsref call 
 + 
 +===== transio functions ===== 
 +  * [[transio|@transio/​transio]] - constructor 
 +  * [[@transio/​any2ascii]] - overload for any2ascii call 
 +  * [[@transio/​class]] - overload for class call 
 +  * [[@transio/​datatype]] - return datatype of object 
 +  * [[@transio/​display]] - overload for display call 
 +  * [[@transio/​double]] - resolve data to double precision 
 +  * [[@transio/​end]] - overload for end call 
 +  * [[@transio/​filename]] - return filename of file storing underlying data 
 +  * [[@transio/​isempty]] - overload for isempty call 
 +  * [[@transio/​isinf]] - overload for isinf call 
 +  * [[@transio/​isnan]] - overload for isnan call 
 +  * [[@transio/​isnumeric]] - overload for isnumeric call 
 +  * [[@transio/​littleendian]] - return little endian-ness (boolean value) of underlying data 
 +  * [[@transio/​minus]] - overload for minus call 
 +  * [[@transio/​mpower]] - overload for mpower call 
 +  * [[@transio/​mrdivide]] - overload for mrdivide call 
 +  * [[@transio/​mtimes]] - overload for mtimes call 
 +  * [[@transio/​ndims]] - overload for ndims call 
 +  * [[@transio/​numel]] - overload for numel call 
 +  * [[@transio/​offset]] - return offset of data of object in underlying file 
 +  * [[@transio/​plus]] - overload for plus call 
 +  * [[@transio/​power]] - overload for power call 
 +  * [[@transio/​rdivide]] - overload for rdivide call 
 +  * [[@transio/​resolve]] - resolve data in native precision 
 +  * [[@transio/​single]] - resolve data in single precision 
 +  * [[@transio/​size]] - overload for size call 
 +  * [[@transio/​subsasgn]] - overload for subsasgn call 
 +  * [[@transio/​subsref]] - overload for subsref call 
 +  * [[@transio/​times]] - overload for times call 
 + 
 +===== xff functions ===== 
 +  * [[xff|@xff/​xff]] - constructor and settings 
 +  * [[@xff/​Call]] - UI/​workspace-safe way to call a method on an object 
 +  * [[@xff/​any2ascii]] - overload for any2ascii call 
 +  * [[@xff/​bless]] - remove garbage-collection stack-trace (persistence control) 
 +  * [[@xff/​clear]] - free memory associated with an object 
 +  * [[@xff/​delete]] - free memory associated with an object 
 +  * [[@xff/​display]] - overload for display call 
 +  * [[@xff/eq]] - overload for eq call 
 +  * [[@xff/​fieldnames]] - overload for fieldnames call 
 +  * [[@xff/​get]] - overload for get call 
 +  * [[@xff/​getcont]] - retrieve object'​s content as struct 
 +  * [[@xff/​help]] - retrieve help on object 
 +  * [[@xff/​methods]] - overload for methods call 
 +  * [[@xff/​ndims]] - overload for ndims call 
 +  * [[@xff/ne]] - overload for ne call 
 +  * [[@xff/​new]] - create new object (requires additional parameter) 
 +  * [[@xff/​setcont]] - set object'​s content (field number and names must match!) 
 +  * [[@xff/​size]] - overload for size call 
 +  * [[@xff/​subsasgn]] - overload for subsasgn call 
 +  * [[@xff/​subsref]] - overload for subsref call (also methods) 
 + 
 +==== xff private functions (besides OBJ::Method files) ==== 
 +  * [[@xff/​private/​bffdocu]] - documentation of BFF formats and functionality 
 +  * [[@xff/​private/​bffio]] - handle BFF (binary file formats) I/O 
 +  * [[@xff/​private/​bffparse]] - parse BFF specification files 
 +  * [[@xff/​private/​dcmio]] - handle DICOM I/O (input only) 
 +  * [[@xff/​private/​dicom_vr]] - DICOM value representations 
 +  * [[@xff/​private/​fifio]] - specifically handle FIF I/O (input only) 
 +  * [[@xff/​private/​tffdocu]] - documentation of TFF formats and functionality 
 +  * [[@xff/​private/​tffio]] - handle TFF (text file formats) I/O 
 +  * [[@xff/​private/​tffparse]] - parse TFF specification files 
 +  * [[@xff/​private/​xffclear]] - clear object (global variable memory) 
 +  * [[@xff/​private/​xffdetectmagic]] - detect filetype from magic tokens 
 +  * [[@xff/​private/​xffdtsfparsefibers]] - parse fibers in DTSF file 
 +  * [[@xff/​private/​xffdtsfwritefibers]] - write fibers to DTSF file 
 +  * [[@xff/​private/​xffformats]] - return parsed formats 
 +  * [[@xff/​private/​xffgetcont]] - get content of object 
 +  * [[@xff/​private/​xffgetscont]] - get super-structure content of object (incl. meta data) 
 +  * [[@xff/​private/​xffmethods]] - return available methods for object types 
 +  * [[@xff/​private/​xffrequestfile]] - file request dialog 
 +  * [[@xff/​private/​xffsetcont]] - set content of object 
 +  * [[@xff/​private/​xffsetscont]] - set super-structure content of object (update meta data) 
 + 
 +===== xfigure functions ===== 
 +  * [[xfigure|@xfigure/​xfigure]] - constructor 
 +  * [[@xfigure/​any2ascii]] - overload for any2ascii call 
 +  * [[@xfigure/​display]] - overload for display call 
 +  * [[@xfigure/​fieldnames]] - overload for fieldnames call 
 +  * [[@xfigure/​methods]] - overload for methods call 
 +  * [[@xfigure/​mlhandle]] - return Matlab graphics handle of xfigure object 
 +  * [[@xfigure/​mstring]] - apply MultiString method to object 
 +  * [[@xfigure/​subsasgn]] - overload for subsasgn call 
 +  * [[@xfigure/​subsref]] - overload for subsref call 
 + 
 +===== xini functions ===== 
 +  * [[xini|@xini/​xini]] - constructor 
 +  * [[@xini/​display]] - overload for display call 
 +  * [[@xini/​fieldnames]] - overload for fieldnames call 
 +  * [[@xini/​methods]] - overload for methods call 
 +  * [[@xini/​subsasgn]] - overload for subsasgn call 
 +  * [[@xini/​subsref]] - overload for subsref call 
 + 
 +===== xprogress functions ===== 
 +  * [[xprogress|@xprogress/​xprogress]] - constructor 
 +  * [[@xprogress/​closebar]] - close xprogress bar and clear object 
 +  * [[@xprogress/​subsasgn]] - overload for subsasgn call 
 +  * [[@xprogress/​subsref]] - overload for subsref call
  
neuroelf_-_all_functions.1277180305.txt.gz · Last modified: 2010/06/22 06:18 by jochen