This shows you the differences between two versions of the page.
Next revision | Previous revision Last revision Both sides next revision | ||
neuroelf_-_all_functions [2010/06/22 06:18] jochen created |
neuroelf_-_all_functions [2011/03/31 02:03] jochen added new functions and completed list of methods |
||
---|---|---|---|
Line 1: | Line 1: | ||
- | ====== NeuroElf - all functions (list only) ====== | + | ====== NeuroElf - all functions ====== |
- | [[acpc2tal]] - convert AC-PC coordinates into TAL coordinates | + | This page can be seen as a whole-sale reference to all function (M-) files of the toolbox. Currently, the documentation is spotty at best... |
- | [[acsvread]] - reads a text based (non-numeric) csv file | + | |
- | [[afni_parse]] - internal parser for AFNI HEADer file structures | + | ===== Toolbox base folder, M-file list only ====== |
- | [[alphasim]] - simulate noise data to estimate cluster threshold | + | * [[BVQXfile]] - legacy function for BVQXtools users (passes to [[xff]]) |
- | [[analyze_setendian]] - set endian type for Analyze files | + | * [[ac2vmp]] - convert ''activation_clusters'' MAT file (Tor Wager tools) to VMP |
- | [[any2ascii]] - packs simple as well as complex variables into ascii | + | * [[acpc2tal]] - convert AC-PC coordinates into TAL coordinates |
- | [[applybvtrf]] - apply BV transformation matrix to system coords | + | * [[acsvread]] - reads a text based (non-numeric) csv file |
- | [[applyfdr]] - apply FDR thresholding to given statistic | + | * afni_parse - internal parser for AFNI HEADer file structures |
- | [[asciiread]] - reads a textfile into one char array | + | * [[alphasim - extended uses|alphasim]] - simulate noise data to estimate cluster threshold |
- | [[asciitab]] - create custom ASCII representation of 2-D matrix | + | * [[analyze_setendian]] - set endian type for Analyze files |
- | [[asciiwrite]] - writes a textfile from a char array to file | + | * [[analyzetype]] - return properties of analyze image datatype |
- | [[autocorr]] - estimate auto-correlation in data | + | * [[any2ascii]] - packs simple as well as complex variables into ascii |
- | averagepmps - average PMP objects and create new object (//abandoned for now//) | + | * [[applybvtrf]] - apply BV transformation matrix to system coords |
- | [[averagevmrs]] - average VMRs | + | * [[applyfdr]] - apply FDR thresholding to given statistic |
- | [[barycoord]] - returns barycentric coordinates of point vs. triangle | + | * [[applyspmsnc]] - apply SPM's spatial normalization (''*_sn.mat'') to coordinates |
- | [[bcc2area]] - lookup TalairachBrain.vmr color codes | + | * [[asciiread]] - reads a textfile into one char array |
- | [[binread]] - reads a binary into one uint8 array | + | * [[asciitab]] - create custom ASCII representation of 2-D matrix |
- | [[binwrite]] - writes a binary stream from a char/uint8 array to file | + | * [[asciiwrite]] - writes a textfile from a char array to file |
- | bitdump - dump bits in a uint buffer (//abandoned for now//) | + | * [[auroc]] - compute area under ROC |
- | [[bvcoordconv]] - converting coordinates for BV | + | * [[autocorr]] - estimate auto-correlation in data |
- | [[bvtrf]] - compile a transformation matrix as in the 3D volume tools | + | * averagepmps - average PMP objects and create new object (//abandoned for now//) |
- | bvxaddvartofile - add a variable to an existing BVX file (//abandoned for now//) | + | * [[averagevmrs]] - average VMRs |
- | bvxcreatefile - create new BVX file (//abandoned for now//) | + | * [[barycoord]] - returns barycentric coordinates of point vs. triangle |
- | [[calcbetas]] - perform GLM regression | + | * [[bcc2area]] - lookup TalairachBrain.vmr color codes |
- | [[checkstruct]] - check an 1x1 struct for validity | + | * [[binread]] - reads a binary into one uint8 array |
- | [[checksyntax]] - checks a snippet of code for syntax validity | + | * [[binwrite]] - writes a binary stream from a char/uint8 array to file |
- | [[clearxffobjects]] - issue ClearObject call on several objects | + | * bitdump - dump bits in a uint buffer (//abandoned for now//) |
- | [[clustercoords]] - get list of clusters in volume | + | * [[bstrapbca]] - bootstrap statistic using BCa |
- | [[clustercoordsc]] - get list of clusters in volume | + | * [[bstrappct]] - bootstrap statistic using percentile |
- | [[clustermeshmap]] - cluster a SMP/SRF based map | + | * [[bvcoordconv]] - converting coordinates for BV |
- | [[clustermeshmapbin]] - cluster binary mesh-based map | + | * [[bvtrf]] - compile a transformation matrix as in the 3D volume tools |
- | [[clustervol]] - cluster volume with threshold | + | * bvxaddvartofile - add a variable to an existing BVX file (//abandoned for now//) |
- | [[clustervol_struct]] - create cluster struct (cell array) for TW tools | + | * bvxcreatefile - create new BVX file (//abandoned for now//) |
- | [[colcode2uint32]] - convert from colcode to uint32 array | + | * [[calcbetas]] - perform GLM regression |
- | [[colorpicker]] - pick a color from the RGB/HSV color space | + | * [[cellipse]] - confidence ellipse coordinates for scatter plot |
- | [[computehrv]] - compute HRV from onsets | + | * [[checkstruct]] - check an 1x1 struct for validity |
- | [[conjval]] - conjugate value (same sign, min abs value with sign) | + | * [[checksyntax]] - checks a snippet of code for syntax validity |
- | [[conjvalp]] - conjugate pvalues (same sign, max value with sign) | + | * [[clearxffobjects]] - issue ClearObject call on several objects |
- | [[conv3d]] - perform 3D convolution | + | * [[clustercoords]] - get list of clusters in volume |
- | [[convones]] - convoles a function with a number of consecutive ones | + | * [[clustercoordsc]] - get list of clusters in volume (//MEX file stub/help//) |
- | [[correlinvtstat]] - convert t-statistic into correlation value | + | * [[clustermeshmap]] - cluster a SMP/SRF based map |
- | [[correlpvalue]] - pvalue of correlation coefficient | + | * [[clustermeshmapbin]] - cluster binary mesh-based map |
- | [[correltstat]] - convert correlation value into t-statistic | + | * [[clustervol]] - cluster volume with threshold |
- | [[corrmap]] - correlation map | + | * [[clustervol_struct]] - create cluster struct (cell array) for TW tools |
- | [[cov_nd]] - computes covariance and corrcoefs for vector pairs in N-D | + | * [[colcode2uint32]] - convert from colcode to uint32 array |
- | cpfile - copies a file (//**deprecated!** use copyfile instead//) | + | * [[colorpicker]] - pick a color from the RGB/HSV color space |
- | crawford_abnorm - calculate Crawford's score abnormality measure (//abandoned for now//) | + | * [[computehrv]] - compute HRV from onsets |
- | crawford_diff - calculate Crawford's single case t-score (//abandoned for now//) | + | * [[conjval]] - conjugate value (same sign, min abs value with sign) |
- | crawford_diss - calculate Crawford's single case dissociation t-score (//abandoned for now//) | + | * [[conjvalp]] - conjugate pvalues (same sign, max value with sign) |
- | [[createfmr]] - create a FMR from a set of IMA/DCM files | + | * [[conv3d]] - perform 3D convolution (//MEX file stub/help//) |
- | [[createmarkervmp]] - create a VMP map with markers (electrode indicators) | + | * [[convones]] - convoles a function with a number of consecutive ones |
- | [[createsrf]] - create a SRF object from coordinates and triangles | + | * [[correlinvtstat]] - convert t-statistic into correlation value |
- | [[createvmr]] - create a VMR from a set of IMA/DCM files | + | * [[correlpvalue]] - pvalue of correlation coefficient |
- | [[csvdbupdate]] - update the data field from CSV files | + | * [[correltstat]] - convert correlation value into t-statistic |
- | [[custom_pwelch]] - compute Welch's periodogram power spectrum | + | * [[corrmap]] - correlation map |
- | cutnpastemovie - create an AVI movie from bitmap files (//abandoned for now//) | + | * [[cov_nd]] - computes covariance and corrcoefs for vector pairs in N-D (//MEX file stub/help//) |
- | [[ddeblank]] - deblank on both ends of strings | + | * cpfile - copies a file (//**deprecated!** use copyfile instead//) |
- | [[degclust]] - degree of clustering of data | + | * crawford_abnorm - calculate Crawford's score abnormality measure (//abandoned for now//) |
- | [[depcorrt]] - dependent correlation comparison t statistic | + | * crawford_diff - calculate Crawford's single case t-score (//abandoned for now//) |
- | detecthandles - detect handles in 3D segmentation (//abandoned for now//) | + | * crawford_diss - calculate Crawford's single case dissociation t-score (//abandoned for now//) |
- | detecthandles_o - detect handles in 3D segmentation (//abandoned for now//) | + | * [[createfmr]] - create a FMR from a set of IMA/DCM files |
- | [[dicom4todmr]] - cheap try to convert a DICOM4 file into DMR/DWI | + | * [[createmarkervmp]] - create a VMP map with markers (electrode indicators) |
- | [[dicom4tofmr]] - cheap try to convert a DICOM4 file into FMR/STC | + | * [[createsrf]] - create a SRF object from coordinates and triangles |
- | [[dilate3d]] - perform 3D dilation with operator | + | * [[createvmr]] - create a VMR from a set of IMA/DCM files |
- | [[dispslice]] - displays a 2-D dataset as an image | + | * [[csvdbupdate]] - update the data field from CSV files |
- | [[dispslicemovie]] - display slice movie | + | * [[custom_pwelch]] - compute Welch's periodogram power spectrum |
- | [[emptysrf]] - create an empty surface container | + | * cutnpastemovie - create an AVI movie from bitmap files (//abandoned for now//) |
- | [[erode]] - perform 3D erosion with operator | + | * [[ddeblank]] - deblank on both ends of strings |
- | [[exceltocoords]] - converts MS-Excel notation into 1x4 double array | + | * [[degclust]] - degree of clustering of data |
- | [[extcaller]] - from where was a call issued | + | * [[depcorrt]] - dependent correlation comparison t statistic |
- | [[fdr_thresholds]] - compute probability thresholds for q(FDR) levels | + | * detecthandles - detect handles in 3D segmentation (//abandoned for now//) |
- | [[fendian]] - return an argument suitable for fopen (endianess) | + | * detecthandles_o - detect handles in 3D segmentation (//abandoned for now//) |
- | [[fileguessendian]] - guess endian type of (partial) file content | + | * [[dicom4todmr]] - cheap try to convert a DICOM4 file into DMR/DWI |
- | [[filesize]] - return a file's size in bytes | + | * [[dicom4tofmr]] - cheap try to convert a DICOM4 file into FMR/STC |
- | [[fileswapendian]] - swap endian type of (partial) file content | + | * dicom_dic - internally used DICOM dictionary function |
- | [[findfiledir]] - find a named file or directory | + | * [[dilate3d]] - perform 3D dilation with operator |
- | [[findfiles]] - Linux/UNIX-like find command/function | + | * [[dispslice]] - displays a 2-D dataset as an image |
- | [[findfirst]] - find first (or last) element != 0 in input | + | * [[dispslicemovie]] - display slice movie |
- | [[fisherr2z]] - convert Pearson correlation into z values | + | * [[dividetrimesh]] - divide triangular mesh into smaller triangles |
- | [[fitrobustbisquare]] - faster fitting function for robust bisquare | + | * [[emptysrf]] - create an empty surface container |
- | [[fitrobustbisquare_img]] - faster fitting function for robust bisquare | + | * [[erode3d]] - perform 3D erosion with operator |
- | [[flexinterp]] - flexible data interpolation (up to 4D) | + | * [[exceltocoords]] - converts MS-Excel notation into 1x4 double array |
- | [[flexinterpn_demo]] - demonstration of flexinterpn | + | * [[extcaller]] - from where was a call issued |
- | [[flexinterpn_method]] - call flexinterpn with one of the typical methods | + | * [[fdr_thresholds]] - compute probability thresholds for q(FDR) levels |
- | [[flexmask]] - flexible data masking | + | * [[fendian]] - return an argument suitable for fopen (endianess) |
- | [[floodfill3]] - keep adjacent values from seed point | + | * [[fieldsize]] - get size of struct field(s) in bytes |
- | [[fmriqasheet]] - create figure with output of fmriquality | + | * [[fileguessendian]] - guess endian type of (partial) file content |
- | [[fmriquality]] - get some quality assurance for fMRI data | + | * [[filesize]] - return a file's size in bytes |
- | [[gammapdf]] - gamma distribution Probability Density Function (PDF) | + | * [[fileswapendian]] - swap endian type of (partial) file content |
- | [[glmtstat]] - compute GLM t statistic | + | * [[findfiledir]] - find a named file or directory |
- | [[gluetostring]] - glues a cell array of chars to one delimited char array | + | * [[findfiles]] - Linux/UNIX-like find command/function |
- | [[gluetostringc]] - C-version of gluetostring | + | * [[findfirst]] - find first (or last) element != 0 in input (//MEX file stub/help//) |
- | gradsmooth - apply gradient based smoothing (//abandoned for now//) | + | * [[fisherr2z]] - convert Pearson correlation into z values |
- | [[grep]] - GNU utils like grep | + | * [[fitrobustbisquare]] - faster fitting function for robust bisquare |
- | [[gzip]] - console/shell interface for MATLAB (does NOT work on Windows!) | + | * [[fitrobustbisquare_img]] - faster fitting function for robust bisquare |
- | [[hasfields]] - test whether a struct has the same fields as a template | + | * [[fitrobustbisquare_multi]] - faster fitting function for robust bisquare multiple models |
- | [[heartbeats]] - detect heart beats and frequency in physio data | + | * [[flexinterpn]] - flexible data interpolation (up to 4D) (//MEX file stub/help//) |
- | [[hexdump]] - dump hexadecimal values into string | + | * [[flexinterpn_demo]] - demonstration of flexinterpn |
- | [[hrf]] - create canonical HRF shape | + | * [[flexinterpn_method]] - call flexinterpn with one of the typical methods |
- | [[hrfboost]] - assume that best fit is the (root of) sum of squares | + | * [[flexmask]] - flexible data masking (//MEX file stub/help//) |
- | [[hxdouble]] - transform a double from/into a readable string | + | * [[floodfill3]] - keep adjacent values from seed point |
- | [[hxsingle]] - transform a single from/into a readable string | + | * [[fmriqasheet]] - create figure with output of fmriquality |
- | [[icc]] - intraclass correlation calculation | + | * [[fmriquality]] - get some quality assurance for fMRI data |
- | [[idftextread]] - read a text-converted IDF file (iView X) | + | * [[gammapdf]] - gamma distribution Probability Density Function (PDF) |
- | [[image_complexity]] - give image complexity estimate | + | * [[glmtstat]] - compute GLM t statistic |
- | [[image_resize]] - resize a HxWxD numeric image to new measures | + | * [[gluetostring]] - glues a cell array of chars to one delimited char array |
- | [[importbesa]] - import EEG/MEG data from a set of BESA files | + | * [[gluetostringc]] - C-version of gluetostring (//MEX file stub/help//) |
- | [[importfif]] - import FIF file | + | * gradsmooth - apply gradient based smoothing (//abandoned for now//) |
- | [[importvtcfromanalyze]] - import an FMR from Analzye files | + | * [[grep]] - GNU utils like grep |
- | [[importrfxglmfromspms]] - import SPM beta maps to a BrainVoyager GLM file | + | * [[gzip]] - console/shell interface for MATLAB (does NOT work on Windows!) |
- | [[importvtcfromanalyze]] - import several Analzye SPM map files | + | * [[hasfields]] - test whether a struct has the same fields as a template |
- | [[importvmrfromanalyze]] - import a VMR from an Analzye file | + | * [[heartbeats]] - detect heart beats and frequency in physio data |
- | [[importvtcfromanalyze]] - import a VTC from Analzye files | + | * [[hexdump]] - dump hexadecimal values into string |
- | [[indepcorrz]] - independent correlation comparison z statistic | + | * [[histcount]] - M-file for histcountc MEX function |
- | [[initialalignment]] - perform the automatic IA | + | * [[hrf]] - create canonical HRF shape |
- | [[invsystem]] - inverts the output argument order of system(...) | + | * [[hrfboost]] - assume that best fit is the (root of) sum of squares |
- | [[isabsolute]] - returns true if the given path is absolute | + | * [[hxdouble]] - transform a double from/into a readable string |
- | [[isemptycell]] - returns a boolean array with isempty over cells | + | * [[hxsingle]] - transform a single from/into a readable string |
- | [[isinfnan]] - checking whether (any) element(s) are inf/nan | + | * [[icbm2tal]] - apply non-linear normalization parameters from ICBM to TAL space |
- | [[isrealvarname]] - true for valid variable name | + | * [[icc]] - intraclass correlation calculation |
- | [[isscalarcell]] - returns a boolean array with isscalar over cells | + | * [[idftextread]] - read a text-converted IDF file (iView X) |
- | [[istransio]] - check (and validate) object | + | * [[image_complexity]] - give image complexity estimate |
- | [[isxff]] - check (and validate) object | + | * [[image_resize]] - resize a HxWxD numeric image to new measures |
- | [[isxfigure]] - perform validity check on input | + | * [[image_rotate]] - rotate a HxWxD numeric image |
- | [[isxini]] - perform validity check on input | + | * [[importbesa]] - import EEG/MEG data from a set of BESA files |
- | [[joinlayers]] - joining of transimg layers into a HxWx3 image + alpha map | + | * [[importfif]] - import FIF file |
- | [[kendtau]] - returns the Kendall tau statistic for two vectors | + | * [[importfmrfromanalyze]] - import an FMR from Analzye files |
- | [[kendtaupairsign]] - return kendall tau ties-correction value | + | * [[importrfxglmfromspms]] - import SPM beta maps to a BrainVoyager GLM file |
- | [[kendtaut]] - give approximate t-score for kendall tau (via monte-carlo) | + | * [[importvmpfromspms]] - import several Analzye SPM map files |
- | [[kendtauz]] - give approximate z-score for kendall tau (via formula) | + | * [[importvmrfromanalyze]] - import a VMR from an Analzye file |
- | [[kurt]] - compute kurtosis of data | + | * [[importvtcfromanalyze]] - import a VTC from Analzye files |
- | [[limitrangec]] - limit data to a range | + | * [[indepcorrz]] - independent correlation comparison z statistic |
- | [[limittorange]] - limit data to percentile range | + | * [[initialalignment]] - perform the automatic IA |
- | [[linscale]] - linear scaling transform | + | * [[invsystem]] - inverts the output argument order of system(...) |
- | [[lsqueeze]] - linear squeeze into Nx1 array | + | * [[isBVQXfile]] - legacy function for BVQXtools users (passes to [[isxff]]) |
- | [[ltriasc]] - ASCII form of a lower triangle matrix (for Mx) | + | * [[isabsolute]] - returns true if the given path is absolute |
- | [[madist]] - Mahalanobis distance of single data argument | + | * [[isectlp]] - compute intersection of line and plain (multi-dim) |
- | [[mainver]] - get matlab main version | + | * [[isemptycell]] - returns a boolean array with isempty over cells (//MEX file stub/help//) |
- | [[makelabel]] - returns a valid label from input | + | * [[isinfnan]] - checking whether (any) element(s) are inf/nan (//MEX file stub/help//) |
- | [[mappvalue]] - convert stats to pvalue (signed) | + | * [[isrealvarname]] - true for valid variable name |
- | [[maxgrad]] - return maximum direct neighbor gradient (diff) per voxel | + | * [[isscalarcell]] - returns a boolean array with isscalar over cells (//MEX file stub/help//) |
- | maxpos - return not the max but only the pos (//deprecated, use minmaxmean instead//) | + | * [[istransio]] - check (and validate) object |
- | [[meannoinfnan]] - build mean of elements other than Inf/NaN | + | * [[isxff]] - check (and validate) object |
- | [[meanpsctrans]] - perform PSC transformation after regression | + | * [[isxfigure]] - perform validity check on input |
- | [[medianc]] - picking the median of an array using quickselect | + | * [[isxini]] - perform validity check on input |
- | [[memusage]] - give the current memory usage of the calling function | + | * [[jksample]] - Jack-Knife sampling indices |
- | [[mergehemivmrs]] - merge segmented VMRs of LH and RH | + | * [[joinlayers]] - joining of transimg layers into a HxWx3 image + alpha map (//MEX file stub/help//) |
- | [[mesh_morph]] - morph the coordinates of a mesh | + | * [[kendtau]] - returns the Kendall tau statistic for two vectors |
- | [[mesh_trianglestoneighbors]] - get mesh neighbors list from triangles | + | * [[kendtaupairsign]] - return kendall tau ties-correction value (//MEX file stub/help//) |
- | [[mesh_trimapmesh]] - get triangular mapping for two spherical meshes | + | * [[kendtaut]] - give approximate t-score for kendall tau (via monte-carlo) |
- | [[minarray]] - minimize array size | + | * [[kendtauz]] - give approximate z-score for kendall tau (via formula) |
- | [[minmaxbbox]] - get minimum, maximum bounding box of objects | + | * [[kurt]] - compute kurtosis of data |
- | [[minmaxmean]] - get min, max, and mean of data array (fast) | + | * [[limitrangec]] - limit data to a range (//MEX file stub/help//) |
- | minpos - return not the min but only the pos (//deprecated, use minmaxmean instead//) | + | * [[limittorange]] - limit data to percentile range |
- | [[mkadir]] - create an absolute directory (unlike to MATLAB's mkdir) | + | * [[linscale]] - linear scaling transform |
- | [[mltype]] - return Matlab's datatype association | + | * [[lsqueeze]] - linear squeeze into Nx1 array |
- | [[mni2tal]] - converts coordinates from MNI brain to best Talairach guess | + | * [[ltriasc]] - ASCII form of a lower triangle matrix (for Mx) |
- | [[mpackage]] - MatLab Installation Package Generator | + | * [[madistd]] - Mahalanobis distance of single data argument |
- | [[mstrrep]] - replace multiple patterns (multi strrep) | + | * [[mainver]] - get matlab main version |
- | [[mtc_concat]] - concatenate MTCs | + | * [[makelabel]] - returns a valid label from input |
- | multi_voi_avg - generate Multi-VOI averaging plots (//abandoned for now//) | + | * [[mappvalue]] - convert stats to pvalue (signed) |
- | [[multimatch]] - match two lists of strings and return matched in first | + | * [[maxgrad]] - return maximum direct neighbor gradient (diff) per voxel |
- | [[multiset]] - set properties for multiple handles | + | * maxpos - return not the max but only the pos (//deprecated, use minmaxmean instead//) |
- | [[multislicetovol]] - convert a multislice MxNx1 image file to a XxYxZ 3-D volume | + | * [[meannoinfnan]] - build mean of elements other than Inf/NaN |
- | [[ne_fastica]] - perform ICA with FastICA algorithm | + | * [[meanpsctrans]] - perform PSC transformation after regression |
- | [[neuroelf_build]] - return the build number of NeuroElf | + | * [[medianc]] - picking the median of an array using quickselect (//MEX file stub/help//) |
- | [[neuroelf_file]] - return file contents | + | * [[memusage]] - give the current memory usage of the calling function |
- | [[neuroelf_gui]] - the NeuroElf graphical user interface (GUI) | + | * [[mergehemivmrs]] - merge segmented VMRs of LH and RH |
- | [[neuroelf_license]] - display NeuroElf license | + | * [[mesh_morph]] - morph the coordinates of a mesh (//MEX file stub/help//) |
- | [[neuroelf_makelibs]] - compile MEX functions (mex/compiler needed!) | + | * [[mesh_neighborsarray]] - create a CxN neighbors list (0-filled) |
- | [[neuroelf_pack]] - create installation/update/diff package | + | * [[mesh_reconstruct]] - create direct border reconstruction information |
- | [[neuroelf_path]] - get path where NeuroElf is installed | + | * [[mesh_trianglestoneighbors]] - get mesh neighbors list from triangles (//MEX file stub/help//) |
- | [[neuroelf_setup]] - NeuroElf post installation setup | + | * [[mesh_trimapmesh]] - get triangular mapping for two spherical meshes (//MEX file stub/help//) |
- | [[neuroelf_version]] - return the version of NeuroElf | + | * [[minarray]] - minimize array size |
- | [[newnatresvmp]] - create natural resolution VMP object | + | * [[minmaxbbox]] - get minimum, maximum bounding box of objects |
- | [[noinfnan]] - replace Inf/NaN's in input with replacement value | + | * [[minmaxmean]] - get min, max, and mean of data array (fast) (//MEX file stub/help//) |
- | [[normvecs]] - normalize vector lengths to 1 | + | * minpos - return not the min but only the pos (//deprecated, use minmaxmean instead//) |
- | [[num2strtab]] - creates a tabular data output of a numeric data table | + | * [[mkadir]] - create an absolute directory (unlike to MATLAB's mkdir) |
- | [[orthimage]] - compute orthogonality matrix (for SPM like display) | + | * [[mltype]] - return Matlab's datatype association |
- | [[orthsdm]] - orthogonalize SDM object in file | + | * [[mmregress]] - multi-model regression |
- | [[orthvec]] - cheap orthogonalization | + | * [[mni2tal]] - converts coordinates from MNI brain to best Talairach guess |
- | [[orthvecs]] - orthogonalize vectors against each other | + | * [[mpackage]] - MatLab Installation Package Generator |
- | [[ostype]] - returns information about the currently used OS | + | * [[mstrrep]] - replace multiple patterns (multi strrep) |
- | [[osz]] - returns ones(size(svzar)) | + | * [[mtc_concat]] - concatenate MTCs |
- | [[packmosaic]] - pack one dimension into one/two other(s) | + | * [[mtimesnd]] - mtimes (AxB * BxC) over dims 3, 4, ... |
- | [[pairs]] - returns the pairs of values in a vector/matrix | + | * [[multimatch]] - match two lists of strings and return matched in first |
- | [[parseformula]] - parse a formula | + | * [[multiset]] - set properties for multiple handles |
- | parsenumtable - parse a numeric table (//deprecated, use u8str2double instead//) | + | * [[multislicetovol]] - convert a multislice MxNx1 image file to a XxYxZ 3-D volume |
- | [[parseopts]] - parse optional input arguments with defaults | + | * [[ne_fastica]] - perform ICA with FastICA algorithm |
- | [[partoanalyze75]] - convert PAR/REC into Analyze 7.5 | + | * [[neuroelf_build]] - return the build number of NeuroElf |
- | [[pinvc]] - pseudo-inverse using svdc | + | * [[neuroelf_file]] - return file contents |
- | [[plotcurves]] - plot different curves and select those of interest | + | * [[neuroelf_gui]] - the NeuroElf graphical user interface (GUI) |
- | [[pmfilter]] - apply a poly-mask bias filter to an image | + | * [[neuroelf_license]] - display NeuroElf license |
- | pmpalignment - compute alignment PMPs (//abandoned for now//) | + | * [[neuroelf_makefiles]] - create additional files used by NeuroElf |
- | [[poolgroups]] - pool several sample groups into one stats analysis | + | * [[neuroelf_makelibs]] - compile MEX functions (mex/compiler needed!) |
- | [[prefilter]] - spike/shift/resonance filter data | + | * [[neuroelf_pack]] - create installation/update/diff package |
- | primes_b - generate list of prime numbers (//abandoned for now//) | + | * [[neuroelf_path]] - get path where NeuroElf is installed |
- | progresscount - display progress in console as a step based counter (//abandoned for now//) | + | * [[neuroelf_setup]] - NeuroElf post installation setup |
- | [[psctrans]] - perform PSC transformation on time course | + | * [[neuroelf_version]] - return the version of NeuroElf |
- | [[qsort]] - sorting of 1-D vectors | + | * [[newhdr]] - create new HDR/NII object |
- | [[ranktrans]] - return rank transform of data | + | * [[newhiresvmr]] - create new hi-res VMR |
- | [[rbalign]] - rigid-body alignment of one volume to a volume stack | + | * [[newnatresvmp]] - create natural resolution VMP object |
- | [[readbesa]] - read in BESA export files for further processing | + | * [[noinfnan]] - replace Inf/NaN's in input with replacement value |
- | readhrv - reads a heart rate variability text file (//abandoned for now//) | + | * [[normcdfc]] - M-file stub for MEX file |
- | [[readpar]] - read a Philips PAR file | + | * [[normvecs]] - normalize vector lengths to 1 |
- | [[regress_coords]] - find best matching quaternion t to match coordinates | + | * [[num2strtab]] - creates a tabular data output of a numeric data table (//MEX file stub/help//) **NOT FUNCTIONAL YET** |
- | [[relfilename]] - build relative filename from two given files | + | * [[orthimage]] - compute orthogonality matrix (for SPM like display) |
- | [[renamedicom]] - rename a dicom file according to a pattern | + | * [[orthsdm]] - orthogonalize SDM object in file |
- | [[renamefields]] - renames fields in a struct | + | * [[orthvec]] - cheap orthogonalization |
- | [[renamefile]] - renames a file to another filename | + | * [[orthvecs]] - orthogonalize vectors against each other |
- | render_vol - 3-D rendering of an spm_vol struct (//abandoned for now//) | + | * [[ostype]] - returns information about the currently used OS |
- | [[renderlayers]] - rendering of transimg layers into a HxWx3 uint8 image | + | * [[osz]] - returns ones(size(svzar)) |
- | [[resampleaa]] - anti-aliased resampling of data | + | * [[packmosaic]] - pack one dimension into one/two other(s) |
- | [[rmean]] - re-weighted mean | + | * [[pairs]] - returns the pairs of values in a vector/matrix |
- | [[robcorrcoef]] - robust correlation coefficient using bisquare weighting | + | * [[parseformula]] - parse a formula |
- | [[robscatter]] - scatter data with option of robustfit | + | * [[parseopts]] - parse optional input arguments with defaults |
- | [[robustF]] - compute F scores given robust stats | + | * [[partoanalyze75]] - convert PAR/REC into Analyze 7.5 |
- | [[robustmean]] - robust mean estimation | + | * [[pinvc]] - pseudo-inverse using svdc |
- | [[robustnsamplet]] - performs robust fit and computes t scores | + | * [[plotcurves]] - plot different curves and select those of interest |
- | [[robustnsamplet_img]] - apply robust N-sample test to set of images | + | * [[pmbfilter]] - apply a poly-mask bias filter to an image |
- | [[robustt]] - compute t scores given robust stats | + | * pmpalignment - compute alignment PMPs (//abandoned for now//) |
- | [[samplefmrspace]] - samples a data slab at a given set of coordinates | + | * [[poolgroups]] - pool several sample groups into one stats analysis |
- | [[safecon]] - safe contrast computation taking missing values into account | + | * [[prefilter]] - spike/shift/resonance filter data |
- | [[scaledata]] - automatically scale data between gray-scale boundaries | + | * progresscount - display progress in console as a step based counter (//abandoned for now//) |
- | [[scaleimage]] - automatically scale image data for image | + | * [[psctrans]] - perform PSC transformation on time course |
- | [[sdist]] - statistics distributions | + | * [[qsort]] - sorting of 1-D vectors (//MEX file stub/help//) |
- | selectstruct - select from a struct with a clause (//abandoned for now//) | + | * [[rangegrid]] - expand 4xD range definition into coordinates (using ndgrid) |
- | [[setinfnantomean]] - set Inf/NaN in input to mean (over dim) | + | * [[ranktrans]] - return rank transform of data |
- | [[setinfnantoval]] - set Inf/NaN in input to specific values(s) | + | * [[rbalign]] - rigid-body alignment of one volume to a volume stack |
- | [[showspmrparams]] - display the rp_*.txt files of an SPM preprocessing | + | * [[readbesa]] - read in BESA export files for further processing |
- | [[showvtcsize]] - displays the sizes of VTCs found on the given path | + | * readhrv - reads a heart rate variability text file (//abandoned for now//) |
- | [[shrinkfg]] - shrink foreground where no changes to topology are made | + | * [[readpar]] - read a Philips PAR file |
- | [[skew]] - compute skewness of data | + | * [[reccheck]] - check quality of REC file (using a subset of fmriquality) |
- | slydetrend - slyly detrends signal (//abandoned for now//) | + | * [[regress_coords]] - find best matching quaternion t to match coordinates |
- | [[smoothdata3]] - apply gaussian smoothing to 3D data | + | * [[relfilename]] - build relative filename from two given files |
- | [[smoothest3d]] - estimate smoothness map of residual time course data | + | * [[renamedicom]] - rename a dicom file according to a pattern |
- | [[smoothkern]] - build N-dim smoothing kernel from FWHM | + | * [[renamefields]] - renames fields in a struct |
- | [[smoothned]] - smooth non-equidistant data with a gaussian kernel | + | * [[renamefile]] - renames a file to another filename |
- | [[solvesudoku]] - solve a sudoku puzzle | + | * render_vol - 3-D rendering of an spm_vol struct (//abandoned for now//) |
- | [[spatent]] - spatial entropy of map values | + | * [[renderlayers]] - rendering of transimg layers into a HxWx3 uint8 image (//MEX file stub/help//) |
- | [[spherecoords]] - compute spherical coordinates | + | * [[replacerobmean]] - replace outliers with robust mean estimate |
- | [[spherecoordsinv]] - compute cartesian coordinates from spherical ones | + | * [[resampleaa]] - anti-aliased resampling of data |
- | [[spheresrf]] - create a new sphere SRF | + | * [[rmean]] - re-weighted mean |
- | [[spherevmr]] - create a 256x256x256 VMR for spherical region growing | + | * [[robcorrcoef]] - robust correlation coefficient using bisquare weighting |
- | [[splitclustercoords]] - split coords of one cluster to subclusters | + | * [[robscatter]] - scatter data with option of robustfit |
- | [[splittocell]] - split a delimited string into a cell array | + | * [[robustF]] - compute F scores given robust stats |
- | [[splittocellc]] - C-version of splittocell | + | * [[robustmean]] - robust mean estimation |
- | [[spm5_preprojobs]] - create jobs and jobhelps from options | + | * [[robustnsamplet]] - performs robust fit and computes t scores |
- | [[spmitrf]] - uncompile an affine transformation into paramters | + | * [[robustnsamplet_img]] - apply robust N-sample test to set of images |
- | [[spmmat2prt]] - convert a SPM.mat file into BV's PRT file(s) | + | * [[robustt]] - compute t scores given robust stats |
- | [[spmmat2sdm]] - convert a SPM.mat file into BV's SDM file(s) | + | * [[samplefmrspace]] - samples a data slab at a given set of coordinates |
- | [[spmtrf]] - compile a transformation matrix as in spm | + | * [[safecon]] - safe contrast computation taking missing values into account |
- | srfalignment - align surface according to their folding patterns (//abandoned for now//) | + | * [[scaledata]] - automatically scale data between gray-scale boundaries |
- | srfbvxalign - perform alignment of SRFs in a BVX file (//abandoned for now//) | + | * [[scaleimage]] - automatically scale image data for image |
- | [[structdiff]] - compare two structures | + | * [[sdist]] - statistics distributions |
- | [[subclusters]] - separate mega cluster into sub-clusters | + | * selectstruct - select from a struct with a clause (//abandoned for now//) |
- | [[subget]] - get a list of properties as a struct | + | * [[setinfnantomean]] - set Inf/NaN in input to mean (over dim) |
- | [[svdc]] - singular value decomposition | + | * [[setinfnantoval]] - set Inf/NaN in input to specific values(s) |
- | [[svmpredict]] - train libSVM based classifier | + | * [[showspmrparams]] - display the rp_*.txt files of an SPM preprocessing |
- | [[svmtrain]] - train libSVM based classifier | + | * [[showvtcsize]] - displays the sizes of VTCs found on the given path |
- | [[tablesextract]] - create tables and extracts from GLM/VMPs | + | * [[shrinkfg]] - shrink foreground where no changes to topology are made |
- | [[tal2acpc]] - convert TAL coordinates into AC-PC coordinates | + | * [[skew]] - compute skewness of data |
- | [[tal2mni]] - converts coordinates from TAL brain to best MNI-space guess | + | * slydetrend - slyly detrends signal (//abandoned for now//) |
- | tcchecksum - checksum using textcrypt (not reliable for binary data) (//abandoned for now//) | + | * [[smoothdata3]] - apply gaussian smoothing to 3D data |
- | tcpdump_parse - parse tcpdump outfile (-w) file (//abandoned for now//) | + | * [[smoothest3d]] - estimate smoothness map of residual time course data |
- | [[tcplot]] - plot timecourse data | + | * [[smoothkern]] - build N-dim smoothing kernel from FWHM |
- | [[tdclient]] - send request to internet TDdatabase / local TD | + | * [[smoothned]] - smooth non-equidistant data with a gaussian kernel |
- | [[tdlabel]] - get NGM label of coordinate | + | * [[smpdist]] - sample values from a discrete distribution |
- | [[tdlocal2]] - lookup local TD NiFTi image file for TalLabel | + | * [[solvesudoku]] - solve a sudoku puzzle |
- | [[tempfilter]] - filter temporal data | + | * [[spatent]] - spatial entropy of map values |
- | [[textcrypt]] - en/decrypt a text message with a rotating key matrix | + | * [[spherecoords]] - compute spherical coordinates |
- | [[textline]] - one line from a multi-line 1xN char array | + | * [[spherecoordsinv]] - compute cartesian coordinates from spherical ones |
- | [[tfgparse]] - parses a xfigure TFG file into a struct | + | * [[spheresrf]] - create a new sphere SRF |
- | [[tfmatrix]] - build 4x4 transformation matrix for different steps | + | * [[spherevmr]] - create a 256x256x256 VMR for spherical region growing |
- | [[threshlutc]] - converting thresholded map to looked up colors | + | * [[splitclustercoords]] - split coords of one cluster to subclusters |
- | [[threshmapc]] - thresholding a double map to 0...1 | + | * [[splittocell]] - split a delimited string into a cell array |
- | [[transmul]] - return the multiplication of M' * M | + | * [[splittocellc]] - C-version of splittocell (//MEX file stub/help//) |
- | [[u8str2double]] - convert numeric text (of multi-value data) to double | + | * [[spm5_preprojobs]] - create jobs and jobhelps from options |
- | [[uint322colcode]] - convert from uint32 to colcode array | + | * [[spmitrf]] - uncompile an affine transformation into paramters |
- | [[unpackmosaic]] - unpack mosaic from two dimensions into third | + | * [[spmmat2prt]] - convert a SPM.mat file into BV's PRT file(s) |
- | [[unzerostring]] - removed string part after first (or last) zero | + | * [[spmmat2sdm]] - convert a SPM.mat file into BV's SDM file(s) |
- | [[utc]] - return utc-like time code (uint32) | + | * [[spmtrf]] - compile a transformation matrix as in spm |
- | [[uunion]] - unsorted set union. | + | * srfalignment - align surface according to their folding patterns (//abandoned for now//) |
- | [[varc]] - calculation of variance along dimension | + | * srfbvxalign - perform alignment of SRFs in a BVX file (//abandoned for now//) |
- | [[vmrspmcoreg]] - apply SPM's coregistration to two VMRs | + | * stcorrect - slice-time correction with additional options (**NOT YET FUNCTIONAL**) |
- | [[vmvreadpos]] - read one vertex movie position in a VMV file | + | * [[stoufferz]] - Stouffer's Z computation |
- | [[vmvwritepos]] - write one vertex movie position in a VMV file | + | * [[structdiff]] - compare two structures |
- | [[vtc_concat]] - concatenate VTCs | + | * [[subclusters]] - separate mega cluster into sub-clusters |
- | [[winsorize]] - Winsorize data (to numbers of SD by numbers of passes) | + | * [[subget]] - get a list of properties as a struct |
- | writestcfiles - create STC files from a 4D array (//abandoned for now//) | + | * [[svdc]] - singular value decomposition (//MEX file stub/help//) |
- | xffcompare - compares two xff objects (or folders with files) (//abandoned for now//) | + | * [[svmpredict]] - train libSVM based classifier (//MEX file stub/help//) |
- | [[xffsrfparseneighbors]] - parse neighbors from SRF file | + | * [[svmtrain]] - train libSVM based classifier (//MEX file stub/help//) |
- | [[xffsrfwriteneighbors]] - write neighbors to SRF file | + | * [[tablesextract]] - create tables and extracts from GLM/VMPs |
- | [[xfigurecallback]] - make sure a callback has its own workspace | + | * [[tal2acpc]] - convert TAL coordinates into AC-PC coordinates |
- | [[zerodstring]] - fill a string with zero chars and fix length | + | * [[tal2icbm]] - apply non-linear normalization from TAL to ICBM/MNI space |
- | [[zsz]] - returns zeros(size(svzar)) | + | * [[tal2mni]] - converts coordinates from TAL brain to best MNI-space guess |
- | [[ztrans]] - perform z-transformation on time course | + | * tcchecksum - checksum using textcrypt (not reliable for binary data) (//abandoned for now//) |
+ | * tcpdump_parse - parse tcpdump outfile (-w) file (//abandoned for now//) | ||
+ | * [[tcplot]] - plot timecourse data | ||
+ | * [[tdclient]] - send request to internet TDdatabase / local TD | ||
+ | * [[tdlabel]] - get NGM label of coordinate | ||
+ | * [[tdlocal2]] - lookup local TD NiFTi image file for TalLabel | ||
+ | * [[tempfilter]] - filter temporal data | ||
+ | * [[textcrypt]] - en/decrypt a text message with a rotating key matrix | ||
+ | * [[textline]] - one line from a multi-line 1xN char array | ||
+ | * [[tfgparse]] - parses a xfigure TFG file into a struct | ||
+ | * [[tfmatrix]] - build 4x4 transformation matrix for different steps | ||
+ | * [[threshlutc]] - converting thresholded map to looked up colors (//MEX file stub/help//) | ||
+ | * [[threshmapc]] - thresholding a double map to 0...1 (//MEX file stub/help//) | ||
+ | * [[transmul]] - return the multiplication of M' * M (//MEX file stub/help//) | ||
+ | * [[u8str2double]] - convert numeric text (of multi-value data) to double (//MEX file stub/help//) | ||
+ | * [[uint322colcode]] - convert from uint32 to colcode array | ||
+ | * [[unpackmosaic]] - unpack mosaic from two dimensions into third | ||
+ | * [[unzerostring]] - removed string part after first (or last) zero | ||
+ | * [[utc]] - return utc-like time code (uint32) | ||
+ | * [[uunion]] - unsorted set union. | ||
+ | * [[varc]] - calculation of variance along dimension (//MEX file stub/help//) | ||
+ | * [[vmrspmcoreg]] - apply SPM's coregistration to two VMRs | ||
+ | * [[vmvreadpos]] - read one vertex movie position in a VMV file | ||
+ | * [[vmvwritepos]] - write one vertex movie position in a VMV file | ||
+ | * [[vtc_concat]] - concatenate VTCs | ||
+ | * [[winsorize]] - Winsorize data (to numbers of SD by numbers of passes) | ||
+ | * writestcfiles - create STC files from a 4D array (//abandoned for now//) | ||
+ | * xffcompare - compares two xff objects (or folders with files) (//abandoned for now//) | ||
+ | * [[xffsrfparseneighbors]] - parse neighbors from SRF file (//MEX file stub/help//) | ||
+ | * [[xffsrfwriteneighbors]] - write neighbors to SRF file (//MEX file stub/help//) | ||
+ | * [[xfigurecallback]] - make sure a callback has its own workspace | ||
+ | * [[zerodstring]] - fill a string with zero chars and fix length | ||
+ | * [[zsz]] - returns zeros(size(svzar)) | ||
+ | * [[ztrans]] - perform z-transformation on time course | ||
+ | |||
+ | ===== Toolbox base folder, C-based functions ===== | ||
+ | * applyspmsnc.c | ||
+ | * clustercoordsc.c | ||
+ | * conv3d.c | ||
+ | * cov_nd.c | ||
+ | * findfirst.c | ||
+ | * flexinterpn.c | ||
+ | * flexmask.c | ||
+ | * floodfill3c.c | ||
+ | * gluetostringc.c | ||
+ | * histcount.c | ||
+ | * hsvconv.c | ||
+ | * indexarray.c | ||
+ | * isemptycell.c | ||
+ | * isinfnan.c | ||
+ | * isscalarcell.c | ||
+ | * joinlayers.c | ||
+ | * kendtaupairsign.c | ||
+ | * limitrangec.c | ||
+ | * medianc.c | ||
+ | * mesh_morph.c | ||
+ | * mesh_neighborsarray.c | ||
+ | * mesh_reconstruct.c | ||
+ | * mesh_trianglestoneighbors.c | ||
+ | * mesh_trimapmesh.c | ||
+ | * minmaxmean.c | ||
+ | * normcdfc.c | ||
+ | * num2strtab.c | ||
+ | * pinvc.c | ||
+ | * qsort.c | ||
+ | * renderlayers.c | ||
+ | * splittocellc.c | ||
+ | * svdc.c | ||
+ | * svm2x.cpp | ||
+ | * svm3x.cpp | ||
+ | * svm3xmodel.c | ||
+ | * svmpredictc2x.c | ||
+ | * svmpredictc3x.c | ||
+ | * svmreadc3x.c | ||
+ | * svmtrainc2x.c | ||
+ | * svmtrainc3x.c | ||
+ | * svmwritec3x.c | ||
+ | * threshlutc.c | ||
+ | * threshmapc.c | ||
+ | * transmul.c | ||
+ | * u8str2double.c | ||
+ | * varc.c | ||
+ | * xffsrfparseneighborsc.c | ||
+ | * xffsrfwriteneighborsc.c | ||
+ | |||
+ | ===== transimg functions/methods ===== | ||
+ | * [[@transimg/transimg]] - constructor | ||
+ | * [[@transimg/addlayer]] - add a layer to a transimg object | ||
+ | * [[@transimg/any2ascii]] - overload for any2ascii call | ||
+ | * [[@transimg/delete]] - delete (free) object | ||
+ | * [[@transimg/dellayer]] - remove layer(s) from transimg object | ||
+ | * [[@transimg/display]] - show object (rendered form) | ||
+ | * [[@transimg/handle]] - return internal handle | ||
+ | * [[@transimg/joinlayers]] - call joinlayers.MEX on layers of transimg object | ||
+ | * [[@transimg/render]] - render object | ||
+ | * [[@transimg/setbackground]] - set/alter background color | ||
+ | * [[@transimg/sethandle]] - set graphics handle | ||
+ | * [[@transimg/setlayer]] - replace layer with new data | ||
+ | * [[@transimg/setlayeralpha]] - replace alpha channel of layer with new data | ||
+ | * [[@transimg/setlayerpixel]] - replace pixel data of layer with new data | ||
+ | * [[@transimg/subsref]] - overload for subsref call | ||
+ | |||
+ | ===== transio functions ===== | ||
+ | * [[@transio/transio]] - constructor | ||
+ | * [[@transio/any2ascii]] - overload for any2ascii call | ||
+ | * [[@transio/class]] - overload for class call | ||
+ | * [[@transio/datatype]] - return datatype of object | ||
+ | * [[@transio/display]] - overload for display call | ||
+ | * [[@transio/double]] - resolve data to double precision | ||
+ | * [[@transio/end]] - overload for end call | ||
+ | * [[@transio/filename]] - return filename of file storing underlying data | ||
+ | * [[@transio/isempty]] - overload for isempty call | ||
+ | * [[@transio/isinf]] - overload for isinf call | ||
+ | * [[@transio/isnan]] - overload for isnan call | ||
+ | * [[@transio/isnumeric]] - overload for isnumeric call | ||
+ | * [[@transio/littleendian]] - return little endian-ness (boolean value) of underlying data | ||
+ | * [[@transio/minus]] - overload for minus call | ||
+ | * [[@transio/mpower]] - overload for mpower call | ||
+ | * [[@transio/mrdivide]] - overload for mrdivide call | ||
+ | * [[@transio/mtimes]] - overload for mtimes call | ||
+ | * [[@transio/ndims]] - overload for ndims call | ||
+ | * [[@transio/numel]] - overload for numel call | ||
+ | * [[@transio/offset]] - return offset of data of object in underlying file | ||
+ | * [[@transio/plus]] - overload for plus call | ||
+ | * [[@transio/power]] - overload for power call | ||
+ | * [[@transio/rdivide]] - overload for rdivide call | ||
+ | * [[@transio/resolve]] - resolve data in native precision | ||
+ | * [[@transio/single]] - resolve data in single precision | ||
+ | * [[@transio/size]] - overload for size call | ||
+ | * [[@transio/subsasgn]] - overload for subsasgn call | ||
+ | * [[@transio/subsref]] - overload for subsref call | ||
+ | * [[@transio/times]] - overload for times call | ||
+ | |||
+ | ===== xff functions ===== | ||
+ | * [[@xff/xff]] - constructor and settings | ||
+ | * [[@xff/Call]] - UI/workspace-safe way to call a method on an object | ||
+ | * [[@xff/any2ascii]] - overload for any2ascii call | ||
+ | * [[@xff/bless]] - remove garbage-collection stack-trace (persistence control) | ||
+ | * [[@xff/clear]] - free memory associated with an object | ||
+ | * [[@xff/delete]] - free memory associated with an object | ||
+ | * [[@xff/display]] - overload for display call | ||
+ | * [[@xff/eq]] - overload for eq call | ||
+ | * [[@xff/fieldnames]] - overload for fieldnames call | ||
+ | * [[@xff/get]] - overload for get call | ||
+ | * [[@xff/getcont]] - retrieve object's content as struct | ||
+ | * [[@xff/help]] - retrieve help on object | ||
+ | * [[@xff/methods]] - overload for methods call | ||
+ | * [[@xff/ndims]] - overload for ndims call | ||
+ | * [[@xff/ne]] - overload for ne call | ||
+ | * [[@xff/new]] - create new object (requires additional parameter) | ||
+ | * [[@xff/setcont]] - set object's content (field number and names must match!) | ||
+ | * [[@xff/size]] - overload for size call | ||
+ | * [[@xff/subsasgn]] - overload for subsasgn call | ||
+ | * [[@xff/subsref]] - overload for subsref call (also methods) | ||
+ | |||
+ | ==== xff private functions (besides OBJ::Method files) ==== | ||
+ | * [[@xff/private/bffdocu]] - documentation of BFF formats and functionality | ||
+ | * [[@xff/private/bffio]] - handle BFF (binary file formats) I/O | ||
+ | * [[@xff/private/bffparse]] - parse BFF specification files | ||
+ | * [[@xff/private/dcmio]] - handle DICOM I/O (input only) | ||
+ | * [[@xff/private/dicom_vr]] - DICOM value representations | ||
+ | * [[@xff/private/fifio]] - specifically handle FIF I/O (input only) | ||
+ | * [[@xff/private/tffdocu]] - documentation of TFF formats and functionality | ||
+ | * [[@xff/private/tffio]] - handle TFF (text file formats) I/O | ||
+ | * [[@xff/private/tffparse]] - parse TFF specification files | ||
+ | * [[@xff/private/xffclear]] - clear object (global variable memory) | ||
+ | * [[@xff/private/xffdetectmagic]] - detect filetype from magic tokens | ||
+ | * [[@xff/private/xffdtsfparsefibers]] - parse fibers in DTSF file | ||
+ | * [[@xff/private/xffdtsfwritefibers]] - write fibers to DTSF file | ||
+ | * [[@xff/private/xffformats]] - return parsed formats | ||
+ | * [[@xff/private/xffgetcont]] - get content of object | ||
+ | * [[@xff/private/xffgetscont]] - get super-structure content of object (incl. meta data) | ||
+ | * [[@xff/private/xffmethods]] - return available methods for object types | ||
+ | * [[@xff/private/xffrequestfile]] - file request dialog | ||
+ | * [[@xff/private/xffsetcont]] - set content of object | ||
+ | * [[@xff/private/xffsetscont]] - set super-structure content of object (update meta data) | ||
+ | |||
+ | ===== xfigure functions ===== | ||
+ | * [[@xfigure/xfigure]] - constructor | ||
+ | * [[@xfigure/any2ascii]] - overload for any2ascii call | ||
+ | * [[@xfigure/display]] - overload for display call | ||
+ | * [[@xfigure/fieldnames]] - overload for fieldnames call | ||
+ | * [[@xfigure/methods]] - overload for methods call | ||
+ | * [[@xfigure/mlhandle]] - return Matlab graphics handle of xfigure object | ||
+ | * [[@xfigure/mstring]] - apply MultiString method to object | ||
+ | * [[@xfigure/subsasgn]] - overload for subsasgn call | ||
+ | * [[@xfigure/subsref]] - overload for subsref call | ||
+ | |||
+ | ===== xini functions ===== | ||
+ | * [[@xini/xini]] - constructor | ||
+ | * [[@xini/display]] - overload for display call | ||
+ | * [[@xini/fieldnames]] - overload for fieldnames call | ||
+ | * [[@xini/methods]] - overload for methods call | ||
+ | * [[@xini/subsasgn]] - overload for subsasgn call | ||
+ | * [[@xini/subsref]] - overload for subsref call | ||
+ | |||
+ | ===== xprogress functions ===== | ||
+ | * [[@xprogress/xprogress]] - constructor | ||
+ | * [[@xprogress/closebar]] - close xprogress bar and clear object | ||
+ | * [[@xprogress/subsasgn]] - overload for subsasgn call | ||
+ | * [[@xprogress/subsref]] - overload for subsref call | ||