vmr.applytrf
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| — | vmr.applytrf [2010/06/22 19:32] (current) – created jochen | ||
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| + | ====== vmr.ApplyTRF ====== | ||
| + | |||
| + | ===== Motivation ===== | ||
| + | The main motivation for using this function is the ability to flexibly script spatial VMR transformation in Matlab. | ||
| + | |||
| + | ===== Method reference (' | ||
| + | < | ||
| + | |||
| + | | ||
| + | |||
| + | Input fields: | ||
| + | |||
| + | | ||
| + | | ||
| + | .asdouble | ||
| + | .inverse | ||
| + | .method | ||
| + | |||
| + | | ||
| + | |||
| + | | ||
| + | |||
| + | ===== Usage examples ===== | ||
| + | * using a TRF that was created in BrainVoyager (and instead of the file selector in the first two lines, this can be scripted!): <code matlab vmr_applytrf_bvtrf.m> | ||
| + | vmr = xff(' | ||
| + | trf = xff(' | ||
| + | |||
| + | % apply transformation with cubic interpolation | ||
| + | trfvmr = vmr.ApplyTRF(trf, | ||
| + | trfvmr.SaveAs; | ||
| + | |||
| + | % clear objects | ||
| + | vmr.ClearObject; | ||
| + | trf.ClearObject; | ||
| + | trfvmr.ClearObject;</ | ||
| + | * using two VMRs, coregister them, then transform the first: <code matlab vmr_applytrf_coreg.m> | ||
| + | vmr1 = xff(sourcevmr); | ||
| + | vmr2 = xff(targetvmr); | ||
| + | |||
| + | % run coregistration (requires SPM5 or SPM8 on the path!!) | ||
| + | % vmr2 is the target space (stationary), | ||
| + | trf = vmrspmcoreg(vmr1, | ||
| + | |||
| + | % resample vmr1 using sinc (lanczos3) interpolation | ||
| + | vmr1_in_vmr2_space = vmr1.ApplyTRF(trf, | ||
| + | |||
| + | % save TRF and VMR | ||
| + | [sourcepath, | ||
| + | if isempty(sourcepath) | ||
| + | sourcepath = ' | ||
| + | end | ||
| + | [nullpath, targetfile] = fileparts(targetvmr); | ||
| + | trf.SaveAs(sprintf(' | ||
| + | vmr1_in_vmr2_space.SaveAs(sprintf(' | ||
| + | |||
| + | % clear objects | ||
| + | clearxffobjects({vmr1, | ||
| + | |||
vmr.applytrf.txt · Last modified: 2010/06/22 19:32 by jochen
